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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgactgctcaatctttttaacatcacaaagaagtagttatttggaaaacatgtaaagctgtaacaagtgcttgtatttttcgctctcattctttctctctgtgaaaactttcgtgtatatgaattttgaagagatccttttaaatctctggatttattgtgttattgtttctctacagTTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTATCAGTCACTTAATGTAACACTCGCTTCATTACCAAAGTCAACTCGAGTAT

Basic information

species Glycine max
transcript GLYMA14G36610.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G36610.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G031825_T05 (Zea mays), 3'ss of exon 3
gtaagatgactgctcaatctttttaacatcacaaagaagtagttatttggaaaacatgtaaagctgtaacaagtgcttgtatttttcgctctcattctttctctctgtgaaaactttcgtgtatatgaattttgaagagat---ccttttaaatctctggat--ttattgtgttattgtttctctacagTTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTATCAGTCACTTAATGTAACACTCGCTTCATTACCAAAGTCAACTCGAGTAT
                                                                                                                  |    |  | ||   | ||  || |||      |||   |   |  ||  | |   | || || ||    ||||||| |||||| | |||||||| |||||||| ||  ||||||| || ||||||||||| |||| ||| ||||| | |||  | ||||||||||| ||||| |
----------------------------------------------------------------------------------------------------------------gttagtatacacatctttcttagagcgatggtttcttttggttgttatatcataacctttttttttttgaaatacagTTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTATCAGTCCCTTATTGTTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTT

upper sequence: GLYMA14G36610.2 (Glycine max), 3'ss of exon 4
lower sequence: AT3G10850.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagatgactgctcaatctttttaacatcacaaagaagtagttatttggaaaa-catgtaaagctgtaacaagtgct-tgtatttttcgctctcattctttctctctgtgaaaactttcgtgtatatgaattttgaagagatccttttaaatctctggatttattgtgttattgtttctctacagTTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTATCAGTCACTTAATGTAACACTCGCTTCATTACCAAAGTCAACTCGAGTAT
                              |    | |  | | |  || |    | |||    |  || || |  |  | ||| ||   |    ||  ||| ||||||| ||    |   || | || | || |||    | | |  |||    |||  |||| |      ||| || | |||||||| ||||| | |||||||| ||||||||||| || || || ||||||||||||||  |   ||| || || ||| ||||||| ||  | || |  || |
----------------------------gtaagtggtaacattaagctgaatcctcttgttcttccctaccatggaccctatatgttctccgtagatcttttatctctgtaaatgtctaaatggagat-agttatgagttaaacat--taag---ctgtgtttact------ttgattttatacagTTTGTTGCTGGATGTGGGAAGTTTTTTGAAGGGACAGCTGAGCAGATGTATCAGTCGTTGTGTGTGACTCTGGCTGCATTACCTAAACCGACACAGGTTT

upper sequence: GLYMA14G36610.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0067g00180.t01 (Vitis vinifera), 3'ss of exon 4
gtaagatgactgctcaatctttttaacatcacaaagaagtagttatttggaaaacatgtaaagctgtaacaagtgcttgtatttttcgctctcattctttctctctgtgaaaactttcgtgtatatgaattttgaagagatccttttaaatctctggatttattgtgttattgtttctctacagTTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTATCAGTCACTTAATGTAACACTCGCTTCATTACCAAAGTCAACTCGAGTAT
                                                                                ||   | | || |    || || | |   ||||  ||  | | | |  | ||   ||  |   | |||||    |    |  | ||    |  |   | | |||||| ||||| |||||||||||||||||||||| || ||||||||||||||||| || ||   ||||||| | || ||||| |||||| ||||| ||||||
-------------------------------------------------------------------------------aatgactggatccc---tttactttgtaataaaatcttgttcttttttgacttgctagttacgatgttaaacagttaa--tagtggttacttcatgcatgtgcagTTTGTTGCTGGTTGTGGGAAATTTTTTGAAGGCACAGCAGAACAGATGTATCAATCGCTATGTGTAACATTGGCCTCATTGCCAAAGCCAACTAGAGTAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714894|gb|BW682059.1|BW682059
EST:     TTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTG                         TTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTAT
genomic: TTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTGgtaagatgac ... ttctctacagTTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTAT
EST: gi|10847409|gb|BF070096.1|BF070096
EST:     TTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTG                         TTTATTGCTAGTTGTGGGAAATGTTTTGAAGGAACTGCAGAACAGATGTAT
genomic: TTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTGgtaagatgac ... ttctctacagTTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTAT
EST: gi|27426743|gb|CA938263.1|CA938263
EST:     TTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTG                         TTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTAT
genomic: TTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTGgtaagatgac ... ttctctacagTTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTAT
EST: gi|6567238|gb|AW234849.1|AW234849
EST:     TTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTG                         TTTATTGCTAGTTGTGGGAAATGNTGTGAAGGAACTGCAGAACAGATGTAT
genomic: TTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTGgtaagatgac ... ttctctacagTTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTAT
EST: gi|298171455|gb|HO016487.1|HO016487
EST:     TTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTG                         TTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTAT
genomic: TTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTGgtaagatgac ... ttctctacagTTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTAT
EST: gi|298196527|gb|HO041270.1|HO041270
EST:     TTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTG                         TTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTAT
genomic: TTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTGgtaagatgac ... ttctctacagTTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTAT
EST: gi|209706270|gb|BW676285.1|BW676285
EST:     TTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTG                         TTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTAT
genomic: TTACTGGCAAAGAGGATGAGCAACCGGCTGTTTTTACTGGAGATACATTGgtaagatgac ... ttctctacagTTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgaagagatccttttaaatctctggatttattgtgttattgtttctctacagTTTATTGCTAGTTGTGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTATCAGTCACTTAATGTAACACTCGCTTCATTACCAAAGTCAACTCGAGTAT
                                         ttgtttctct  CT-rich tract
                            atttattgtgttatt  TA-rich tract