1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttggttagttagttagtttagttgtcttgccaacctctccttttaagaacttcattgacttaactttcttccttctttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG
species | Glycine max |
transcript | GLYMA14G36540.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAG ATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGCTTCTCGATACTEST: gi|7588536|gb|AW704259.1|AW704259
genomic: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGgttggttagt ... ttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACT
EST: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAG ATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTEST: gi|120533350|gb|EH261483.1|EH261483
genomic: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGgttggttagt ... ttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACT
EST: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAG ATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTEST: gi|298196446|gb|HO041189.1|HO041189
genomic: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGgttggttagt ... ttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACT
EST: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAG ATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTEST: gi|192323797|gb|FK015608.1|FK015608
genomic: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGgttggttagt ... ttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACT
EST: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAG ATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTEST: gi|37994649|gb|CF806308.1|CF806308
genomic: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGgttggttagt ... ttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACT
EST: GAATATCAGGGTGCATACAAG ATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTEST: gi|17400857|gb|BM177639.1|BM177639
genomic: GAATATCAGGGTGCATACAAGgttggttagt ... ttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACT
EST: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAG ATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTEST: gi|21638580|gb|BM139626.1|BM139626
genomic: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGgttggttagt ... ttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACT
EST: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAN ATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTEST: gi|151396530|gb|EV266407.1|EV266407
genomic: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGgttggttagt ... ttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACT
EST: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAG ATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTEST: gi|254335254|gb|GR846751.1|GR846751
genomic: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGgttggttagt ... ttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACT
EST: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAG ATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTEST: gi|254340298|gb|GR858423.1|GR858423
genomic: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGgttggttagt ... ttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACT
EST: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAG ATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTEST: gi|254319588|gb|GR829100.1|GR829100
genomic: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGgttggttagt ... ttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACT
EST: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAG ATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTEST: gi|16996929|gb|BM086301.1|BM086301
genomic: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGgttggttagt ... ttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACT
EST: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAG ATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACT
genomic: AAGTCTTCTTGATGGGTGAAGAGGTTGGGGAATATCAGGGTGCATACAAGgttggttagt ... ttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACT
aacctctccttttaagaacttcattgacttaactttcttccttctttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG
acttaac putative branch site (score: 3)
cttaactttcttcctt CT-rich tract
tttcatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttagttagttagtttagttgtcttgccaacctctccttttaagaacttcattgacttaactttcttccttctttcattttagATATCCAAGGGGCTGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG