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gtatatcttgttgcacacctatatttctctttcaaaaaaaatattattcggattactatgtggctgctaatgcatttggtatatcacatctagGTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTCTTAAAACCCGGAATAGAGGACATATTAGTGGCAGATCTTAATTTTGTTT
species | Glycine max |
transcript | GLYMA14G36520.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCCATTGCTTCTGCGTCTATAGCACAG GTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTCEST: gi|208132790|gb|GD927797.1|GD927797
genomic: CCCATTGCTTCTGCGTCTATAGCACAGgtatatcttg ... tcacatctagGTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTC
EST: TTTATGAATACATTGACCCAACACCCTTTGCTTCTGCGTCTATAGCACAG GTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTCEST: gi|17519076|gb|BM188118.1|BM188118
genomic: TTTATGAATACATTGACCCAACACCCATTGCTTCTGCGTCTATAGCACAGgtatatcttg ... tcacatctagGTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTC
EST: TTTATGAATACATTGACCCAACACCCATTGCTTCTGCGTCTATAGCACAG GTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTCEST: gi|7690969|gb|AW759104.1|AW759104
genomic: TTTATGAATACATTGACCCAACACCCATTGCTTCTGCGTCTATAGCACAGgtatatcttg ... tcacatctagGTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTC
EST: TTTATGAATACATTGACCCAACACCCATTGCTTCTGCGTCTATAGCACAG GTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTC
genomic: TTTATGAATACATTGACCCAACACCCATTGCTTCTGCGTCTATAGCACAGgtatatcttg ... tcacatctagGTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTC
aaatattattcggattactatgtggctgctaatgcatttggtatatcacatctagGTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTCTTAAAACCCGGAATAGAGGACATATTAGTGGCAGATCTTAATTTTGTTT
tgctaat putative branch site (score: 2)
attactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatcttgttgcacacctatatttctctttcaaaaaaaatattattcggattactatgtggctgctaatgcatttggtatatcacatctagGTTCATGGAGCAAGGCTAAAAGGCTCTAGGGAGGATGTGGTTATAAAGGTCTTAAAACCCGGAATAGAGGACATATTAGTGGCAGATCTTAATTTTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT