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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtagtattacatcactcttctaagaaattcaagatttggtctctctctctctctctcatggctctgcataaaaaggattctaagttttggagacataattttagGGTAAAGACGAGAGGGGTATCTGGCTTCAACAGCTCACGTATGGTGTTTTTGGCTTAGGTAACCGGCAATATGAACATTTTAATAAG

Basic information

species Glycine max
transcript GLYMA14G36070.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G36070.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 4
---gtttgtagtattaca-tcactctt--ctaagaaatt-caagatttggtctctctctctctctctcatggctctgcataaaaaggattctaagttttggagacataatt------ttagGGTAAAGACGAGAGGGGTATCTGGCTTCAACAGCTCACGTATGGTGTTTTTGGCTTAGGTAACCGGCAATATGAACATTTTAATAAG
     ||||  | ||  | |   |||   ||  ||| |  ||        ||  |||   |   | | ||   | ||  | |      || | |  | ||  ||     ||      ||       | | |||||||    |||||||||||| ||||| ||||||||||||||  | |||||||| ||||||||||||||||| |||
gttagttgttctgttgtagttgatctaaactgtgaagtgacagtgagcaatcgttcttctttctttttatttttatgttttattttattttttaaatctgttgatgagtttggttctttttcagGGAAAAGAGAGGGAGGCCTGGCTTCAACAACTCACATATGGTGTTTTTGGTCTGGGTAACCGCCAATATGAACATTTTAACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctctcatggctctgcataaaaaggattctaagttttggagacataattttagGGTAAAGACGAGAGGGGTATCTGGCTTCAACAGCTCACGTATGGTGTTTTTGGCTTAGGTAACCGGCAATATGAACATTTTAATAAG
                                           acataatttta  TA-rich tract