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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcatgtgtttctgatagaaactgttttaatctaatctaaatggtgatggactaaattctaacaagctgtaattttggctcctcttcttgatcagGTGAACAGCTTCTTCAATTGGAACGCGAGAAGGGAATTGTCATCAGATTCATGATTGGTCACAG

Basic information

species Glycine max
transcript GLYMA14G33700.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208142940|gb|GD941524.1|GD941524
EST:     GTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAG                         GTGAACAGCTTCTTCAATTGGAACGCGAGAAGGGAATTGTCATCAGATTCA
genomic: GTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGgtatcatgtg ... tcttgatcagGTGAACAGCTTCTTCAATTGGAACGCGAGAAGGGAATTGTCATCAGATTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggtgatggactaaattctaacaagctgtaattttggctcctcttcttgatcagGTGAACAGCTTCTTCAATTGGAACGCGAGAAGGGAATTGTCATCAGATTCATGATTGGTCACAG
                ttctaac  putative branch site (score: 1)
                                ttttggctcctcttct  putative PPT
            taaattctaa  TA-rich tract