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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtcattgatgaatttgccttgtataattcctctttctaacaaatagtgagggtaagtctcaattcactaattccattagaaatttgcaagggaatgttttttcaaatgctgctcttgtgagctgtcatattttaaagtagacatgaatggaagtatacctcatcctaataatctcatatttcagGAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAATATGGTTGTCTGTATACTGAATGCAGTGCAAAAACCAGAGTCAATGTTA

Basic information

species Glycine max
transcript GLYMA14G26690.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G26690.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g15090.t01 (Vitis vinifera), 3'ss of exon 5
gtacgtcattgatgaatttgccttgtataattcctctttctaacaaatagtgagggtaagtctcaattcactaattccattagaaatttgcaagggaatgttttttcaaatgctgctcttgtgagctgtcatattttaaagtagacatgaatggaagtatacctcatcctaataatctcatatttcagGAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAATATGGTTGTCTGTATACTGAATGCAGTGCAAAAACCAGAGTCAATGTTA
                                                                          ||| |||     | |    |   |||    || |   | | || ||  ||  | |  ||   |   | ||  ||  |              ||| | ||  | || |  ||||||||||||| |||||||||| |||||| || ||||| ||||||||||| |||||||| || || | |   |||||||||||||||||  | || |||||  
--------------------------------------------------------------------------ttctattttgtgtctattgg---atgccagttgattggatactattaggaagt-ttgtaccatttggaaggtatcgacaa----------tatcgtgattgtatctttcttcagGAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAATATGGATGCCTTTTTCTCGAATGCAGTGCAAAAACTCGGGTAAATGTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193488390|gb|FK456213.1|FK456213
EST:     ATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAG                         GAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAA
genomic: ATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAGgtacgtcatt ... catatttcagGAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAA
EST: gi|193686899|gb|FK632522.1|FK632522
EST:     ATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAG                         GAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAA
genomic: ATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAGgtacgtcatt ... catatttcagGAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAA
EST: gi|58017830|gb|CX704572.1|CX704572
EST:     CAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAG                         GAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAA
genomic: CAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAGgtacgtcatt ... catatttcagGAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAA
EST: gi|11413897|gb|BF425908.1|BF425908
EST:     CAACATATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAA                         GAAAGTGAAAGGGTTGTCAGTCTAAA-GGAAGGAATAGACTTTGCTAGGGA
genomic: CAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAGgtacgtcatt ... catatttcagGAAAGTGAAAGGGTTGTCAG-CAAAAAGGAAGGAATAGACTTTGCTAGGGA
EST: gi|58018302|gb|CX705044.1|CX705044
EST:     CAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAG                         GAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAA
genomic: CAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAGgtacgtcatt ... catatttcagGAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAA
EST: gi|51336316|gb|CO980182.1|CO980182
EST:     CAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAG                         GAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAA
genomic: CAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAGgtacgtcatt ... catatttcagGAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAA
EST: gi|58024481|gb|CX711222.1|CX711222
EST:     CAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAG                         GAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAA
genomic: CAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAGgtacgtcatt ... catatttcagGAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAA
EST: gi|192325663|gb|FK019519.1|FK019519
EST:     CAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAA                         GAAAGTGAAAGGGTTGTCAGCAA
genomic: CAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAGgtacgtcatt ... catatttcagGAAAGTGAAAGGGTTGTCAGCAA
EST: gi|192294546|gb|FG986395.1|FG986395
EST:     CAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAG                         GAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAA
genomic: CAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAGgtacgtcatt ... catatttcagGAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaaagtagacatgaatggaagtatacctcatcctaataatctcatatttcagGAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGAATAGACTTTGCTAGGGAATATGGTTGTCTGTATACTGAATGCAGTGCAAAAACCAGAGTCAATGTTA
                                 tcctaat  putative branch site (score: 2)
                                    taataatctcatattt  TA-rich tract