1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggtggatggaagtggcaatagcagtgtgttatccgtaaaatgaaaatgaacagttgtattgatggctgcttctgacaatgactactttttcatggttcagGCTCCCAGACCATTGTCCCAGTTAGACTTGGAGAAGGTCCTTGCCACTTCCCGGAAGACTACCGTTGCTGCATTTGAATACAATGGATTGAGTGCAGATG
species | Glycine max |
transcript | GLYMA14G26420.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCAATTAGAGAACTGCTGGACGAAGAGAAGAAAGGGAGAAGTTTTTACT GCTCCCAGACCATTGTCCCAGTTAAGACTTGGAGAAGGTCCTTGCCACTTEST: gi|22933406|gb|BU550545.1|BU550545
genomic: TCCAATTAGAGAACTGCTGGACGAAGAGAAGAAAGGGAGAAGTTTTT-CTgtgagtgatt ... catggttcagGCTCCCAGACCATTGTCCCAGTT-AGACTTGGAGAAGGTCCTTGCCACTT
EST: TTCCAATTAGAGAACTGCTGGACGAAGAGAAGAAAGGGAGAAGTTTTTCT GCTCCCAGACCATTGTCCCAGTTAGACTTGGAGAAGGTCCTTGCCACTTCC
genomic: TTCCAATTAGAGAACTGCTGGACGAAGAGAAGAAAGGGAGAAGTTTTTCTgtgagtgatt ... catggttcagGCTCCCAGACCATTGTCCCAGTTAGACTTGGAGAAGGTCCTTGCCACTTCC
atgaacagttgtattgatggctgcttctgacaatgactactttttcatggttcagGCTCCCAGACCATTGTCCCAGTTAGACTTGGAGAAGGTCCTTGCCACTTCCCGGAAGACTACCGTTGCTGCATTTGAATACAATGGATTGAGTGCAGATG
ttctgac putative branch site (score: 2)
ctactttttc putative PPT
tacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtggatggaagtggcaatagcagtgtgttatccgtaaaatgaaaatgaacagttgtattgatggctgcttctgacaatgactactttttcatggttcagGCTCCCAGACCATTGTCCCAGTTAGACTTGGAGAAGGTCCTTGCCACTTCCCGGAAGACTACCGTTGCTGCATTTGAATACAATGGATTGAGTGCAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- tggatgg
- - - - - - - - - - - -gtgtgtt
- - - - - - - - - - - - - - - - - - aaaatgaa
- - - - - - - - - - - - - - - - - - - - - - aatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcttc