1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cttgtgatttaacgtcaaagatctttaagcatagtttctcaatgttcattaaagagacacagcttatattttttctgcctggtttctaatcatgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT
species | Glycine max |
transcript | GLYMA14G24270.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|192331116|gb|FK020336.1|FK020336
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: TATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|26059647|gb|CA802561.1|CA802561
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|6914860|gb|AW396390.1|AW396390
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: GAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|151405517|gb|EV275331.1|EV275331
genomic: GAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|19346754|gb|BM891634.1|BM891634
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|16349184|gb|BI974779.1|BI974779
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|192318541|gb|FK011365.1|FK011365
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|37995705|gb|CF807294.1|CF807294
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|23726885|gb|BU761446.1|BU761446
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|9819697|gb|BE555210.1|BE555210
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: ATCCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|298182182|gb|HO026357.1|HO026357
genomic: ATC-TGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|6914510|gb|AW396040.1|AW396040
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTGCCAAGCACTGCTATCATCTGTAEST: gi|208277689|gb|GE078266.1|GE078266
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|298198899|gb|HO042262.1|HO042262
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|17519828|gb|BM188870.1|BM188870
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|7233789|gb|AW569132.1|AW569132
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|7926292|gb|AW832318.1|AW832318
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|7233908|gb|AW569250.1|AW569250
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|16348147|gb|BI973742.1|BI973742
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|192318542|gb|FK011366.1|FK011366
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|151410578|gb|EV280393.1|EV280393
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAEST: gi|16104779|gb|BI892519.1|BI892519
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATG GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCAATGTTTAAGCCTGACATGgtaggtcaca ... catgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
tcattaaagagacacagcttatattttttctgcctggtttctaatcatgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT
ttctaat putative branch site (score: 2)
ttatattttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtgatttaacgtcaaagatctttaagcatagtttctcaatgttcattaaagagacacagcttatattttttctgcctggtttctaatcatgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
cttgtga
- - - - - - - - - - - - - - - - - - - -caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - agacaca