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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttaggggggtaatggggtgtcatatatgataaaagatagacatactcataagctaaatgcaaattctcataaatgtgttactccttttcttatctcagATCCCAATAGAATGTTTTGAGGAACCATGGGTTATCTTCCGAGGGAAAGATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACACCGAGCCTGTCCTC

Basic information

species Glycine max
transcript GLYMA14G23860.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G23860.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 3'ss of exon 4
atttaggggggtaatggggtgtcatatatgataaaagatagacatactcataagct---aaatgcaaattc-tcata-aatgtgttactccttttcttatctcagATCCCAATAGAATGTTTTGAGGAACCATGGGTTATCTTCCGAGGGAAAGATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACACCGAGCCTGTCCTC
                    || |   |  || || |||  |   | | | ||  |    | | | | ||  | |||   | || |      | | |  |||||| | |||||||| ||||||||||| |  ||||| || |||||||| || |||||||  ||||||||||| |||||||| ||||| ||| ||||||| ||||
--------------------gtaacgca--atgaatgattcaggcatttacaatgtccggagtaccagttaatgatatgttttgatgtggtctgtgtgttctcagGTACCAATAGATTGTTTTGAGGAGCAGTGGGTAATTTTCCGAGGAAAGGATGGGAGACCTGGATGTGTTCAGAACACATGTGCTCACAGAGCCTGCCCTC

upper sequence: GLYMA14G23860.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 4
atttaggggggtaatggggtgtcatatatgataaaagatagacatactcataagctaaatgcaaattctcataaatgtgttactccttttcttatctcagATCCCAATAGAATGTTTTGAGGAACCATGGGTTATCTTCCGAGGGAAAGATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACACCGAGCCTGTCCTC
   ||         || | | |||   ||  |   |    | || | | |  || |  |   ||| |    |  || || |     ||      |||||| | |||||||| ||||||||||| |  ||||| || |||||||| || |||||||  |||||||||||   |||||| ||||| ||| |||| || ||||
--gtaaaaacaacgtgcgat-tcaggcatttttttacgaggtcagagttagcagttgcag--aaacttatgtttatttgatgtggtttgcgcattctcagGTGCCAATAGATTGTTTTGAGGAGCAGTGGGTAATTTTCCGAGGAAAGGATGGGAGACCTGGATGTGTTATGAACACATGTGCTCACAGAGCTTGCCCTC

upper sequence: GLYMA14G23860.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g02700.t01 (Vitis vinifera), 3'ss of exon 3
-------------------------------------------------------------------------------atttaggggggtaat--ggggtgtcatatatgataaaagatagacatactcataagctaaatgcaaattctcata--aatgtgttactccttttcttatctcagATCCCAATAGAATGTTTTGAGGAACCATGGGTTATCTTCCGAGGGAAAGATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACACCGAGCCTGTCCTC
                                                                                | |   |  | |||  | |  |    | |   | | || |   |   |         |  ||  | || || |   ||    || | ||||||  | | |||||| ||||| || || ||||||||||| |||||| |||| || ||| |||||||||| ||||||||||| |  |||||||| || ||  |||| || ||||
gtaagccagttttccaaacatctaaggctcatatttagtgattaaatacagattttccacattgtggctactcaacaatgtcttaagtagcaataagagaggaggcaaacatttatagcttatctggccttgtgataatctgtgagttttccttgtaacagttttcacctttttctgtttcagATTCCAATTGATTGCTTTGAGGAACCGTGGGTTGTCTTTCGTGGGCAAGATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcataagctaaatgcaaattctcataaatgtgttactccttttcttatctcagATCCCAATAGAATGTTTTGAGGAACCATGGGTTATCTTCCGAGGGAAAGATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACACCGAGCCTGTCCTC
       agctaaa  putative branch site (score: 3)
                                tgttactccttttctt  putative PPT
                 aaattctcataaat  TA-rich tract