Sequence
atgc intronic sequence ATGC exonic sequence...ataggttttggcatttgagtgtgaattgttacacttcaaatatttacacaaaccttttagaactgtatagtttattatataaagtatttgtttatttcagCGTGCTGGGGCAGTATTCCCTCAGAGGTCTGAACAATCTGCACCTGTTTTCACACCTCCACAAACACAGCCATTGGCATCATACCCTCAAAATATACACG
Basic information
species | Glycine max |
transcript | GLYMA14G21410.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G21410.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G32760.1 (Arabidopsis thaliana), 3'ss of exon 4
ataggttttggcatttgagtgtgaattgttacacttcaaatatttac--acaaaccttttagaactgtatagtttattatataaagtatttgtttatttcagCGTGCTGGGGCAGTATTCCCTCAGAGGTCTGAACAATCTGCACCTGTTTTCACACCTCCACAAACACAGCCATTGGCATCATACCCTCAAAATATACACG
| | | | | | | | | | | | || | | | ||| ||| || ||| | | | | | ||| |||||||||||||| || || ||||||||||| || || ||| || ||||| ||||||||||| ||||||||||| ||| |||| ||||||| |||| | |
-ttacatctcataatgaattcttcttagatccttttgtgagttctgttagaaaatcttctactactct-tgcctaaccaccagtgactcatgtccctttcagCGTGCTGGTGCTGTTTTCCCTCAGAGATCAGAGAGATCAGCTCCTGTGTTCACACCTCCTCAAACACAGCCTTTGACATCTTACCCTCCAAATCTTCGTA
upper sequence: GLYMA14G21410.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0008g03720.t01 (Vitis vinifera), 3'ss of exon 4
----ataggttttggcatttgagtgtgaatt--gttacacttcaaatatttacacaaaccttttagaactgtatagtttattatataaagtatttgtttatttcagCGTGCTGGGGCAGTATTCCCTCAGAGGTCTGAACAATCTGCACCTGTTTTCACACCTCCACAAACACAGCCATTGGCATCATACCCTCAAAATATACACG
|| | || ||||| ||| | || | || | || | |||| | ||| ||| | || | || ||||| || |||||||||||||||||||||||||||||||||||| | |||||||| || || ||||||||||| ||||| || |||||| ||||||||| | |
ttttattg-cttcaaaatttggttgttatgcaagtagtgcctctagccattttgtcttcattttctt-ttatatt-tttctcatgtcaactattttttc---tcagCGTGCTGGGGCAGTATTCCCTCAGAGGTCTGAGAGGACAGCACCTGTATTTACCCCTCCACAAACGCAGCCTCTGACATCATTTCCTCAAAATCTTCGTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acacaaaccttttagaactgtatagtttattatataaagtatttgtttatttcagCGTGCTGGGGCAGTATTCCCTCAGAGGTCTGAACAATCTGCACCTGTTTTCACACCTCCACAAACACAGCCATTGGCATCATACCCTCAAAATATACACG
tttatttc CT-rich tract
aactgtatagtttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ataggttttggcatttgagtgtgaattgttacacttcaaatatttacacaaaccttttagaactgtatagtttattatataaagtatttgtttatttcagCGTGCTGGGGCAGTATTCCCTCAGAGGTCTGAACAATCTGCACCTGTTTTCACACCTCCACAAACACAGCCATTGGCATCATACCCTCAAAATATACACG
- - - - -ggcattt
- - - - - - - - gagtgtg
- - - - - - - - - - - - - - - -cacttca
- - - - - - - - - - - - - - - - - - - - - - -acacaaa