1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ataggatccatgtccatatgtggaactggaaatcagtaactttcatgtagcaatttggttgttatttctatttattactacatatatgtttccccttcagGTATCTTTGTAGCTTTGGCCTTGCGGTTTGATGTTTCTAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTTTAGGATACACTGTTGGCTTGGTCCT
species | Glycine max |
transcript | GLYMA14G21190.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGACATTGTTATCCCTG GTATCTTTGTAGCTTTGGCCTTGCGGTTTGATGTTTCTAGAGGAAAACAGCEST: gi|192297521|gb|FG992719.1|FG992719
genomic: TTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGACATTGTTATCCCTGgtaggttgaa ... tccccttcagGTATCTTTGTAGCTTTGGCCTTGCGGTTTGATGTTTCTAGAGGAAAACAGC
EST: TTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGACATTGTTATCCCTG GTATCTTTGTAGCTTTGGCCTTGCGGTTTGATGTTTCTAGAGGAAAACAGCEST: gi|192301904|gb|FG995522.1|FG995522
genomic: TTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGACATTGTTATCCCTGgtaggttgaa ... tccccttcagGTATCTTTGTAGCTTTGGCCTTGCGGTTTGATGTTTCTAGAGGAAAACAGC
EST: TTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGACATTGTTATCCCTG GTATCTTTGTAGCTTTGGCCTTGCGGTTTGATGTTTCTAGAGGAAAACAGC
genomic: TTCTGCAAGGCCATTTTCAATGCTTGGACTTGGTGACATTGTTATCCCTGgtaggttgaa ... tccccttcagGTATCTTTGTAGCTTTGGCCTTGCGGTTTGATGTTTCTAGAGGAAAACAGC
tgtagcaatttggttgttatttctatttattactacatatatgtttccccttcagGTATCTTTGTAGCTTTGGCCTTGCGGTTTGATGTTTCTAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTTTAGGATACACTGTTGGCTTGGTCCT
tatgtttccccttc CT-rich tract
ttatttctatttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataggatccatgtccatatgtggaactggaaatcagtaactttcatgtagcaatttggttgttatttctatttattactacatatatgtttccccttcagGTATCTTTGTAGCTTTGGCCTTGCGGTTTGATGTTTCTAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTTTAGGATACACTGTTGGCTTGGTCCT
- - - - catgtcc
- - - - - - - - - - - - - - - - - - - - - tcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttgtt