1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gatgagaatgtaaacacttgactattttgtagatggttatctttttggtttaattgtatattgcctagtcactgacatcttatcttctcttttctggcagGTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTATTGGTCGGAG
species | Glycine max |
transcript | GLYMA14G14000.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAG GTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTAEST: gi|120533853|gb|EH261986.1|EH261986
genomic: TGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAGgtctgttttc ... tttctggcagGTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTA
EST: TGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAG GTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTAEST: gi|26056275|gb|CA799189.1|CA799189
genomic: TGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAGgtctgttttc ... tttctggcagGTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTA
EST: TGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAG GTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTA
genomic: TGGGAGTAAATTGAAGAGAAATGTTTTCAGGGGGTCTTGGATGCCCAGAGgtctgttttc ... tttctggcagGTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTA
tggtttaattgtatattgcctagtcactgacatcttatcttctcttttctggcagGTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTATTGGTCGGAG
cactgac putative branch site (score: 2)
catcttatcttctctt CT-rich tract
taattgtatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgagaatgtaaacacttgactattttgtagatggttatctttttggtttaattgtatattgcctagtcactgacatcttatcttctcttttctggcagGTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTATTGGTCGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - -gaatgta
- - - - - - - cacttga
- - - - - - - - - - - - - - - -gatggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tattgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtcactg