Sequence
atgc intronic sequence ATGC exonic sequence...ttttaagcatacatagaggtggcttacttagtaaatttattgaatttatgatttgcctcacatctctgtagctaataactgtcccttgatatgtatgtagATAAAGGCAGATATTGAGACTCAGGGAGAATTTGTGAATTCATTGATTAGAGAGGTGAACAATGCAGTTTATCAGAACATAGATGATGTAGTGGCATTTG
Basic information
species | Glycine max |
transcript | GLYMA14G10800.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G10800.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os08g03560.2 (Oryza sativa), 3'ss of exon 3
------------------------ttttaagcatacatagaggtggcttacttagtaaatttattgaatttatgatttgcctcacatctctgtagctaataactgt-cccttgatatgtatgtagATAAAGGCAGATATTGAGACTCAGGGAGAATTTGTGAATTCATTGATTAGAGAGGTGAACAATGCAGTTTATCAGAACATAGATGATGTAGTGGCATTTG
| || |||| |||| || || || || | | | || | ||| | | | |||| | ||| | | ||| | | | |||| ||||| ||| |||||||||| || ||||||||||| |||||||| | ||||||| |||||||| ||| | | ||||| ||||| || |||||||
gtaagtagaatattctgctcagattattggacatatgtagaattg---tagataccaa---tgaaaagctagctggttctcgcactgatgtatggctatttactttactctttgttcattttcagATCAAGGCTGATGTTGAGACTCAAGGTGAATTTGTGAAATCATTGATCAAGGAGGTGACCAATGCAGCTTACAAAGATATAGAAGATGTGGTTGCATTTG
upper sequence: GLYMA14G10800.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G019225_T01 (Zea mays), 3'ss of exon 4
-----------ttttaagcatacatagaggtggcttacttagtaaatttattgaatttatgatttgcctcacatctctgtagctaataactgtcccttgatatgtatgtagATAAAGGCAGATATTGAGACTCAGGGAGAATTTGTGAATTCATTGATTAGAGAGGTGAACAATGCAGTTTATCAGAACATAGATGATGTAGTGGCATTTG
|| | | | || || | | | | | | | | ||| || || || | || | | || |||| ||||||||| |||||||||| || ||||||||||| ||||| || | ||||||| | ||||| || | | || || ||||| || |||||||
gtaagtagtgagttcagtctagcttattggaaatctggtgaccatacaaacagctctaatgggctggttctggcactaacagtattttgtaactttttatttaatttgcagATCAAGGCAGATGTTGAGACTCAAGGTGAATTTGTGAAATCATTAATCAAGGAGGTGACTAGTGCAGCCTACAAAGATATCGAAGATGTGGTTGCATTTG
upper sequence: GLYMA14G10800.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv10s0003g05680.t01 (Vitis vinifera), 3'ss of exon 2
--ttttaagcatacatagaggtggcttacttagtaaatttattgaatttatgatttgcc---tcacatctctgtagctaataactgtcccttgatatgtatgtagATAAAGGCAGATATTGAGACTCAGGGAGAATTTGTGAATTCATTGATTAGAGAGGTGAACAATGCAGTTTATCAGAACATAGATGATGTAGTGGCATTTG
|| | ||| |||| || ||| | | || ||| | || | || || ||| |||| | | | | | || |||| | |||||| |||||||||||||| |||||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||||||||| || ||||| || |||||||
aaattggaatataactagaagttgctgcttgaataggtttcaacgagttttagttgaccagttcagatcttt-ttgtttacaattgtc----attgtgtatgcagATAAAGGCAGATGTTGAGACTCAAGGAGAATTTGTGAACTCTTTGATAAGAGAGGTCAATAATGCAGTTTATCAGAACATTGAAGATGTTGTTGCATTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatgatttgcctcacatctctgtagctaataactgtcccttgatatgtatgtagATAAAGGCAGATATTGAGACTCAGGGAGAATTTGTGAATTCATTGATTAGAGAGGTGAACAATGCAGTTTATCAGAACATAGATGATGTAGTGGCATTTG
taataact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttaagcatacatagaggtggcttacttagtaaatttattgaatttatgatttgcctcacatctctgtagctaataactgtcccttgatatgtatgtagATAAAGGCAGATATTGAGACTCAGGGAGAATTTGTGAATTCATTGATTAGAGAGGTGAACAATGCAGTTTATCAGAACATAGATGATGTAGTGGCATTTG
- - - gcataca
- - - - - - - -gaggtgg
- - - - - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgta