Sequence
atgc intronic sequence ATGC exonic sequencegtattttctgtaaatttgttttagaattgtcacttttgaggtcttttgaattttgaaggaatttattggtatcactttttcttcttcctctgaacagcgggggcagttaaaagAGGCCTGATCATGCTGACCTGCGGTACAAGTGCAGGACATATGCACGTCTTCTGCAACATTTGAAG
Basic information
species | Glycine max |
transcript | GLYMA14G08520.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G08520.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os11g17600.3 (Oryza sativa), 3'ss of exon 11
gtattttctgtaaatttgttttagaattgtcacttttgaggtcttttgaattttgaaggaatttattggtatcactttttcttcttcctctgaacagcgggggcagttaaaagAGGCCTGATCATGCTGACCTGCGGTACAAGTGCAGGACATATGCACGTCTTCTGCAACATTTGAAG
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---------gtaaatttagtctagtaat--------tgcagattatttaactttaaccggatc-atttttctcaacataattccttttgcttt-cagAGAGGGCAACTCCA-GAGGCCTGACCATGCTGATATGAGGTACAAATGCAGGACATATGCCCGACTTCTACAGTTCATCAAG
upper sequence: GLYMA14G08520.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G099056_T01 (Zea mays), 3'ss of exon 11
gtattttctgtaaatttgttttagaattgtcacttttgaggtcttttgaattttgaaggaatttattggtatcactttttcttcttcctctgaacagcgggggcagttaaaagAGGCCTGATCATGCTGACCTGCGGTACAAGTGCAGGACATATGCACGTCTTCTGCAACATTTGAAG
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gtttcttc-atagcttcatttttgaaa-gtaaatatt----tcctttcccatttgagatgaccgacagagttcacttttaa------ctgaaagcagCGTGGACAATTGAA-GCGGCCTGATCATGCAGACCTTAGGTATAAATGCAGGACATATGCCCGACTTCTGCAGCACTTAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaatttattggtatcactttttcttcttcctctgaacagcgggggcagttaaaagAGGCCTGATCATGCTGACCTGCGGTACAAGTGCAGGACATATGCACGTCTTCTGCAACATTTGAAG
tttttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattttctgtaaatttgttttagaattgtcacttttgaggtcttttgaattttgaaggaatttattggtatcactttttcttcttcctctgaacagcgggggcagttaaaagAGGCCTGATCATGCTGACCTGCGGTACAAGTGCAGGACATATGCACGTCTTCTGCAACATTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG