1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agggaccaaatgattagtttaaccttggcttaagtttaactattgtttcttagagcatgatgaatatagaatctgaaacattttcgtgtactgagtgcagAACACTACTTCAATGGAGAATCAGTTGCGGCATCTTGTGTATCTTTTGGAAAATGCCATGCTTAATCTTCCACCGGGTCAAGAACAAATGTCATGGTTGA
species | Glycine max |
transcript | GLYMA14G08180.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCATGATAGACAAGGAAGGACTGTTCTTATTTTGAGACCTGGAATGCAG AACACTACTTCAATGGAGAATCAGTTGCGGCATCTTGTGTATCTTTTGGAAEST: gi|209723023|gb|BW668869.1|BW668869
genomic: TTCATGATAGACAAGGAAGGACTGTTCTTATTTTGAGACCTGGAATGCAGgtatcgtggt ... ctgagtgcagAACACTACTTCAATGGAGAATCAGTTGCGGCATCTTGTGTATCTTTTGGAA
EST: TTCATGATAGACAAGGAAGGACTGTTCTTATTTTGAGACCTGGAATGCAG AACACTACTTCAATGGAGAATCAGTTGCGGCATCTTGTGTATCTTTTGGAAEST: gi|6454433|gb|AW185116.1|AW185116
genomic: TTCATGATAGACAAGGAAGGACTGTTCTTATTTTGAGACCTGGAATGCAGgtatcgtggt ... ctgagtgcagAACACTACTTCAATGGAGAATCAGTTGCGGCATCTTGTGTATCTTTTGGAA
EST: TTCATGATAGACAAGGAAGGACTGTTCTTATTTTGAGACCTGGAATGCAG AACACTACTTCAATGGAGAATCAGTTGCGGCATCTTGTGTATCTTTTGGAAEST: gi|6724789|gb|AW309188.1|AW309188
genomic: TTCATGATAGACAAGGAAGGACTGTTCTTATTTTGAGACCTGGAATGCAGgtatcgtggt ... ctgagtgcagAACACTACTTCAATGGAGAATCAGTTGCGGCATCTTGTGTATCTTTTGGAA
EST: TTCATGATAGACAAGGAAGGACTGTTCTTATTNTGAGACCTGGAATGCAG AACACTACTTCAATGGAGAATCAGTTGCGGCATCTTGTGTATCTTTTGGAA
genomic: TTCATGATAGACAAGGAAGGACTGTTCTTATTTTGAGACCTGGAATGCAGgtatcgtggt ... ctgagtgcagAACACTACTTCAATGGAGAATCAGTTGCGGCATCTTGTGTATCTTTTGGAA
tttcttagagcatgatgaatatagaatctgaaacattttcgtgtactgagtgcagAACACTACTTCAATGGAGAATCAGTTGCGGCATCTTGTGTATCTTTTGGAAAATGCCATGCTTAATCTTCCACCGGGTCAAGAACAAATGTCATGGTTGA
aatatagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggaccaaatgattagtttaaccttggcttaagtttaactattgtttcttagagcatgatgaatatagaatctgaaacattttcgtgtactgagtgcagAACACTACTTCAATGGAGAATCAGTTGCGGCATCTTGTGTATCTTTTGGAAAATGCCATGCTTAATCTTCCACCGGGTCAAGAACAAATGTCATGGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC