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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accaaaacggatcataggacaagggtgaatttgccttgtattcggtagtcgttactataccagcatgctaacgtagtttaaggatatgttaacatttcagTGGTTGGTGTTAAGATATGCAATACTTAATTTGGAAGTTATTAAAGCAGCCATTCTTTTAGCAAAACAGGAAGGTCTTCTTGTTTCCTTGGACTTGGCCA

Basic information

species Glycine max
transcript GLYMA14G07980.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283366|gb|BE020927.1|BE020927
EST:     GCAGAGGAATTGACCAAAGAGGATTTTAAAGGCTCCAAG                         TGGTTGGTGTTAAGATATGCAATACTTAATTTGGAAGTTATTAAAGCAGCC
genomic: GCAGAGGAATTGACCAAAGAGGATTTTAAAGGCTCCAAGgttattttgg ... aacatttcagTGGTTGGTGTTAAGATATGCAATACTTAATTTGGAAGTTATTAAAGCAGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtcgttactataccagcatgctaacgtagtttaaggatatgttaacatttcagTGGTTGGTGTTAAGATATGCAATACTTAATTTGGAAGTTATTAAAGCAGCCATTCTTTTAGCAAAACAGGAAGGTCTTCTTGTTTCCTTGGACTTGGCCA
                                      atatgttaacattt  TA-rich tract