1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgattacttttcactgtactacttggtctttggcctctattgtatttgttttggcagcattgtcacctaagtatccacaatttcttttggtggatgtgtgtttagaggagccatggtttatagttttgtatctgatcgatttcttctcaattcttgtctcccagGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGGGCAATTGCCAGTAACATAGAAGCTAACTTCTTGAAG
species | Glycine max |
transcript | GLYMA14G07750.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAG GGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGGEST: gi|24205453|gb|BU964706.1|BU964706
genomic: CTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAGgtgattactt ... tgtctcccagGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGG
EST: AACCTCCTAAG GGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGGEST: gi|57574105|gb|CX547080.1|CX547080
genomic: AACCTCCTAAGgtgattactt ... tgtctcccagGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGG
EST: CTCTGATGATTCCTGAGCTCTTCATTCGAG-TGGAATTAAACCTCCTAAG GGTGTTCTCCTTTATGGGCCTCCTGGTACT-GTAAAAACATTGTTAGCTAGEST: gi|193372457|gb|FK337410.1|FK337410
genomic: CTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAGgtgattactt ... tgtctcccagGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGT-AAAACATTGTTAGCTAG
EST: CTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAG GGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGG
genomic: CTCTGATGAATCCTGAGCTCTTCATTCGAGTTGGAATTAAACCTCCTAAGgtgattactt ... tgtctcccagGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGG
gccatggtttatagttttgtatctgatcgatttcttctcaattcttgtctcccagGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGGGCAATTGCCAGTAACATAGAAGCTAACTTCTTGAAG
atctgat putative branch site (score: 4)
tttcttctcaattctt putative PPT
tttatagttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattacttttcactgtactacttggtctttggcctctattgtatttgttttggcagcattgtcacctaagtatccacaatttcttttggtggatgtgtgtttagaggagccatggtttatagttttgtatctgatcgatttcttctcaattcttgtctcccagGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGGGCAATTGCCAGTAACATAGAAGCTAACTTCTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG