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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtttgatcctctttgatatttttaggggatgttaagatcatctcttacctttttaaccatctcttactgttttcttttttctgttgatccaagTTTTCCTTGTCAGGGAAGCATCCATATCACAAGTCATGTTTTAAAGAGTTGAATCATCCAAAATGTGAAGTTTGCTTCCAATTT

Basic information

species Glycine max
transcript GLYMA14G07060.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07060.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0019g02430.t01 (Vitis vinifera), 3'ss of exon 5
gtagtttgatcctctttgatatttttaggggat-------gttaagatcatctcttaccttttta-accatctcttactgttttcttttttctgttgatccaagTTTTCCTTGTCAGGGAAGCATCCATATCACAAGTCATGTTTTAAAGAGTTGAATCATCCAAAATGTGAAGTTTGCTTCCAATTT
||    |  | |       || |  ||    |         ||||  |  |||  | |||| ||| |  | ||||||||| |    |||| |||| ||| | ||||||| |||||||||| | || |||| |||||||| ||||| |||||||||| |||||| |||||||||||||||  |||||||
gtcacctttttcataaaagtagtactacacaaactatataattaactttgtctaatcccttcttatattagctcttactggt----ttttcctgtcgattctagTTTTCTTTGTCAGGGAGGGATGCATACCACAAGTCCTGTTTCAAAGAGTTGACTCATCCCAAATGTGAAGTTTGCCACCAATTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catctcttacctttttaaccatctcttactgttttcttttttctgttgatccaagTTTTCCTTGTCAGGGAAGCATCCATATCACAAGTCATGTTTTAAAGAGTTGAATCATCCAAAATGTGAAGTTTGCTTCCAATTT
                  ccatctcttactgttt  CT-rich tract
                               ttttctttttt  TA-rich tract