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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaatgccaagtacaatggtctttatttcttcagtggggtctctcttatttgaagtcgtttgattttgatcataatattataacttagtgtaaaaaaaaaaaaaacattatcacggtgtcactgagctgtttaattttgcagGTTGAAAATGTGACTCACACTGGCCCAAAAAAATTGGTATTGTATTTCACGGGCGCCACCAACATTCTCTACACTTTCGGCGGGCACGCCGTCACAGT

Basic information

species Glycine max
transcript GLYMA14G06600.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06600.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0067g00330.t01 (Vitis vinifera), 3'ss of exon 5
gtaagcaatgccaagtacaatggtctttatttcttcagt--ggggtctctcttatttgaagtcgtttgattttg---------atcataatattataacttagtgtaaaaaaaaaaaaaacattatcacggtgtcactgagctgtttaattttgcagGTTGAAAATGTGACTCACACTGGCCCAAAAAAATTGGTATTGTATTTCACGGGCGCCACCAACATTCTCTACACTTTCGGCGGGCACGCCGTCACAGT
                    |  |||| |||| |||  |  ||| | |    |  ||  | || |       ||         ||||   |  | | |  |  |||||    ||   |||     | ||  ||    ||   | |    |||| ||||||||||||||||  ||||| ||||| |  ||  ||||  |||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| ||
-------------------gtattcttcattttttctttctgggtttttcactccttacaatcatccttcactggataaacgaatcactttccttttatcttttgtaatctcaacggaaagccattgactttg--gatggtttttactgttttacagGTTGAAAATGTGAAGCACACAGGCCCTACTAAGCTGGTCCTGTATTTCACTGGGGCCACCAACATCCTCTACACTTTCGGCGGACACGCCGTCACTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtaaaaaaaaaaaaaacattatcacggtgtcactgagctgtttaattttgcagGTTGAAAATGTGACTCACACTGGCCCAAAAAAATTGGTATTGTATTTCACGGGCGCCACCAACATTCTCTACACTTTCGGCGGGCACGCCGTCACAGT
                                         gtttaat  putative branch site (score: 4)
     aaaaaaaaaaaaacat  TA-rich tract