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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgataatttgcttaactaaatatttttgtgttatactatattttccagtttacgtattctttatgcagtgtgcttgtggtttctgcaaattgttgactggtacatggttcatgatctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT

Basic information

species Glycine max
transcript GLYMA14G06340.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 4
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagatgataatttgcttaactaaatatttttgtgttatactatattttccagtttacgtattctttatgcagtgtgcttgtggtttctgcaaattgttgactggtacatggttcatgatctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT
                                          | ||| || |||  ||| | |  |||      | | |||||| ||||      ||  | | |         |||     ||       || ||||||| ||||| || |||||||||||||| |||||||| |||||||| ||||| || || || || |||   ||    ||||  || || |||||||||||
----------------------------------------gttgtatatttcagcctac-tgtcattttcttcatat-cttgtgttttc-----gtttctaatt---------ttc-----cttcgggttttatagGTGATTCTGAGCCAGTTAAGATGTTTGATAGAACAGCCAATTTGGCCAACAATCAAATTATAAACTATAAGTGCTCTCCTAATGAGAAGTGGTTGGTTTT

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 4
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagatgataatttgcttaactaaatatttttgtgttatactatattttccagtttacgtattctttatgcagtgtgcttgtggtttctgcaaattgttgactggtacatggttcatgat--ctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT
                                                           || || | | |  |   | ||    | |||| || ||  |  |   ||   |   ||||  |  ||     | ||  |||||| ||||| || |||||||||||||| ||||| || |||||||||||||| || || || || |||   ||    ||||  || || |||||||| ||
-----------------------------------------------------------gttttatatctttaacttactgtcagcttcttcatatcatgtatatgt-tgtttctcatttttgcttcgatatttccagGTGATTCTGAGCCAGTTAAGATGTTTGATAGAACGGCTAATTTGGCAAACAATCAAATTATAAACTATAAGTGCTCTCCTAATGAGAAGTGGTTGGTCTT

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 4
------------------gtaagatgataatttgcttaactaaatatttttgtgttatac---tatattttccagtttacgtattctttatgcagtgt----gcttgtggtttctgcaaattgttgactggtacatggttcatgatctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT
                  |   ||  |    | || |  |  | | |||  | |||  ||   | |||||    | ||   |  | ||||||   | |     ||||  || | |   | ||||||  |     ||||||  || | | | |  | | ||||||| ||||||||||| || ||||||||||| || || ||| ||| |||||| ||||||||||| ||||||||||| ||  | ||||| |||||||||||
gtaagatgcctttctttggcctgaacaagggtggcatttcccattctttgggagttgaacatttttatttcatgggttgattcatgtttatggtatattttcacttggtgtcttttggatttgttgttt--ccaatggttt-tgttgtctctctcatttagGTGATTCTGAACCTGTAAAAATGTTTGAGAGGACTGCTAATCTGGTAAACAATCAGATAATTAACTATCGATGTGATCCATCTGAAAAGTGGTTGGTTTT

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0027g01340.t01 (Vitis vinifera), 3'ss of exon 1
gtaagatgataatttgcttaactaaatatttttgtgttatactatattttccagtttacgtattctttatgcagtgtgcttgtggtttctgcaaattgttgactggtacatggttcatgatctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT--------------------------------------------------------
                                                                                          |   || ||    | |  |   ||  || ||  ||  |  |   |||||| || |||||||| || ||||||||||||||    ||||||  |||||| ||||||||||| ||||||| ||| ||  | ||||| |||||||||||                                                        
------------------------------------------------------------------------------------------gagcatagtcacgtagacctcagtatatcattgatcaa--tcaaaggtgattcagaacctgtaaaaatgtttgagagaactattaatttgataaacaatcagATAATTAACTATCGATATGATCCGTCTGAAAAGTGGTTGGTTTTGATTGGAATTGCTCCGGGTTCACCTGAGAGACCACAGCTTGTCAAAGGGAATATGC

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 4
lower sequence: PP1S7_102V6.1 (Physcomitrella patens), 3'ss of exon 4
gtaagatgataatttgcttaactaaatatttttgtgttatactatattttccagtttacgtattctttatgcagtgtgcttgtggtttctgcaaattgttgactggtacatggttcatgatctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT
                                    || |  |  ||||  || ||  || ||| | | |      |   | |   ||  |          | ||  || |  | | |  |   | ||||    |||||| ||||||||||| |||||||||||||| ||||||||||||     ||||||||| || |||||| |||| |||||  |||| || ||| | ||  |
-------------------------------acaacttgtgttgcatttctca-ttggcgaattttgtgtatgacttttctatcagtttggtgctccaaacaatgagactttttccctcgtgcctgtaac----agGTGAATCTGAACCTGTAAAGATGTTTGAGAGGACAGCAAATTTGAGTGGCAACCAGATCATCAATTATAGATGCGACCCGTCAGAGAAGTGGCTTGTGCT

upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 4
lower sequence: PP1S147_10V6.1 (Physcomitrella patens), 3'ss of exon 4
gtaagatgataatttgcttaactaaatatttttgtgttatactatattttccagtttacgt-attctttatgcagtgtgcttgtggtttctgcaaattgttg-actggtacat-ggttcatgatctatataactt----gtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT
                        ||   |||||| |   ||| |     ||  | || |  ||   || ||  |  |    | | |||||   | || ||| | |   ||||   | | |  ||| | |   |      ||||||| ||||||||||| |||||||||||||| ||||||||  ||     ||||||||| ||||| ||  |||| |||||  | || |||||| | || ||
-------------------gtacgaacccttttgtttctgactgt-----ccgatgtatgagatagcttctgttggattggcgagttttctatcagttcttgcattcacacattaatgctttctctctttgggtctgtaatagGTGAATCTGAACCTGTAAAGATGTTTGAGAGGACAGCAAACCTGAGTGGCAACCAGATCATTAACTACAGATGCGACCCCGCTGAGAAATGGCTTGTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggtttctgcaaattgttgactggtacatggttcatgatctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT
                                          atataac  putative branch site (score: 3)
                                      atctatataa  TA-rich tract