Sequence
atgc intronic sequence ATGC exonic sequencegtaagatgataatttgcttaactaaatatttttgtgttatactatattttccagtttacgtattctttatgcagtgtgcttgtggtttctgcaaattgttgactggtacatggttcatgatctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT
Basic information
species | Glycine max |
transcript | GLYMA14G06340.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 4
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagatgataatttgcttaactaaatatttttgtgttatactatattttccagtttacgtattctttatgcagtgtgcttgtggtttctgcaaattgttgactggtacatggttcatgatctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT
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----------------------------------------gttgtatatttcagcctac-tgtcattttcttcatat-cttgtgttttc-----gtttctaatt---------ttc-----cttcgggttttatagGTGATTCTGAGCCAGTTAAGATGTTTGATAGAACAGCCAATTTGGCCAACAATCAAATTATAAACTATAAGTGCTCTCCTAATGAGAAGTGGTTGGTTTT
upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 4
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaagatgataatttgcttaactaaatatttttgtgttatactatattttccagtttacgtattctttatgcagtgtgcttgtggtttctgcaaattgttgactggtacatggttcatgat--ctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT
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-----------------------------------------------------------gttttatatctttaacttactgtcagcttcttcatatcatgtatatgt-tgtttctcatttttgcttcgatatttccagGTGATTCTGAGCCAGTTAAGATGTTTGATAGAACGGCTAATTTGGCAAACAATCAAATTATAAACTATAAGTGCTCTCCTAATGAGAAGTGGTTGGTCTT
upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 4
------------------gtaagatgataatttgcttaactaaatatttttgtgttatac---tatattttccagtttacgtattctttatgcagtgt----gcttgtggtttctgcaaattgttgactggtacatggttcatgatctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT
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gtaagatgcctttctttggcctgaacaagggtggcatttcccattctttgggagttgaacatttttatttcatgggttgattcatgtttatggtatattttcacttggtgtcttttggatttgttgttt--ccaatggttt-tgttgtctctctcatttagGTGATTCTGAACCTGTAAAAATGTTTGAGAGGACTGCTAATCTGGTAAACAATCAGATAATTAACTATCGATGTGATCCATCTGAAAAGTGGTTGGTTTT
upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0027g01340.t01 (Vitis vinifera), 3'ss of exon 1
gtaagatgataatttgcttaactaaatatttttgtgttatactatattttccagtttacgtattctttatgcagtgtgcttgtggtttctgcaaattgttgactggtacatggttcatgatctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT--------------------------------------------------------
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------------------------------------------------------------------------------------------gagcatagtcacgtagacctcagtatatcattgatcaa--tcaaaggtgattcagaacctgtaaaaatgtttgagagaactattaatttgataaacaatcagATAATTAACTATCGATATGATCCGTCTGAAAAGTGGTTGGTTTTGATTGGAATTGCTCCGGGTTCACCTGAGAGACCACAGCTTGTCAAAGGGAATATGC
upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 4
lower sequence: PP1S7_102V6.1 (Physcomitrella patens), 3'ss of exon 4
gtaagatgataatttgcttaactaaatatttttgtgttatactatattttccagtttacgtattctttatgcagtgtgcttgtggtttctgcaaattgttgactggtacatggttcatgatctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT
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-------------------------------acaacttgtgttgcatttctca-ttggcgaattttgtgtatgacttttctatcagtttggtgctccaaacaatgagactttttccctcgtgcctgtaac----agGTGAATCTGAACCTGTAAAGATGTTTGAGAGGACAGCAAATTTGAGTGGCAACCAGATCATCAATTATAGATGCGACCCGTCAGAGAAGTGGCTTGTGCT
upper sequence: GLYMA14G06340.2 (Glycine max), 3'ss of exon 4
lower sequence: PP1S147_10V6.1 (Physcomitrella patens), 3'ss of exon 4
gtaagatgataatttgcttaactaaatatttttgtgttatactatattttccagtttacgt-attctttatgcagtgtgcttgtggtttctgcaaattgttg-actggtacat-ggttcatgatctatataactt----gtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT
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-------------------gtacgaacccttttgtttctgactgt-----ccgatgtatgagatagcttctgttggattggcgagttttctatcagttcttgcattcacacattaatgctttctctctttgggtctgtaatagGTGAATCTGAACCTGTAAAGATGTTTGAGAGGACAGCAAACCTGAGTGGCAACCAGATCATTAACTACAGATGCGACCCCGCTGAGAAATGGCTTGTATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192299634|gb|FG993274.1|FG993274EST: GATGTTGGGTCTCGTAACACAGACCTCTGTATAC-ACTGGTCAATTGAAG -TGACTCTGAACCTGTTAAGATGTTTGAGA
genomic: GATGTTGGGTCTCGTAACACAGACCTCTGTATACCACTGGTCAATTGAAGgtaagatgat ... taacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtggtttctgcaaattgttgactggtacatggttcatgatctatataacttgtagGTGACTCTGAACCTGTTAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAACCAGATAATTAATTATCGATGTGACCCTACAGAAAAATGGTTGGTTTT
atataac putative branch site (score: 3)
atctatataa TA-rich tract