Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaacaatcttgtctttatatgttgatcatgataaaattatttggtggtatcgtgaagatgtgtgctttcaaagagcctaaacattcactttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATTCGAGCATATTCCATTGAATAA

Basic information

species Glycine max
transcript GLYMA14G04520.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213588073|gb|DB979179.1|DB979179
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTGAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCCGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|17964291|gb|BM271028.1|BM271028
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGT-TTTTTATTCCTACCTCTGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|193328213|gb|FK293450.1|FK293450
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|37995157|gb|CF806746.1|CF806746
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|8402125|gb|BE057759.1|BE057759
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|15814273|gb|BI786548.1|BI786548
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|14125238|gb|BG789676.1|BG789676
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|37996287|gb|CF807876.1|CF807876
EST:     CTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTANNAGTAGT                         GGATGTCTCCCATAATGATTTATGTGGTACAATTCCTACCTCTNGGCCAT
genomic: CTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAA-AGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCAT
EST: gi|58025114|gb|CX711855.1|CX711855
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|192326528|gb|FK017275.1|FK017275
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|15815888|gb|BI788163.1|BI788163
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|193348907|gb|FK318109.1|FK318109
EST:     GGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
genomic: GGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|207828337|gb|GD799622.1|GD799622
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|23056915|gb|BU577818.1|BU577818
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|7029580|gb|AW459421.1|AW459421
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|120495970|gb|EH224137.1|EH224137
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|26057238|gb|CA800152.1|CA800152
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCCGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|21256459|gb|BQ453347.1|BQ453347
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCCGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|10255179|gb|BE822945.1|BE822945
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|13790989|gb|BG653580.1|BG653580
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTG
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTG
EST: gi|27424142|gb|CA935662.1|CA935662
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCCGGGGCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|298185858|gb|HO031019.1|HO031019
EST:     ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCCGGGCCATT
genomic: ACTGGCCCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT
EST: gi|7028197|gb|AW457980.1|AW457980
EST:     CCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGT                         GGATGTCTCCAATAATGATTTATTTGGTACAATTCCTACCTCTGGGCCATT
genomic: CCGATCCCCAAGGAACTTGCTGCTGTTTCAAGCCTTAAAGTAGTgtaagtaaca ... ttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtatcgtgaagatgtgtgctttcaaagagcctaaacattcactttattttcagGGATGTCTCCAATAATGATTTATGTGGTACAATTCCTACCTCTGGGCCATTCGAGCATATTCCATTGAATAA
                              gcctaaa  putative branch site (score: 3)
                                       ttcactttattttc  putative PPT
                                      attcactttatttt  TA-rich tract