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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctattttcttaatttctcacatggactattttcttatcgctagatcttattttcttgctgaaagcgtttgacactgtgacttaattgacattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCGACATGAAGAAGCTGGAAGAGGCTGTCCGTAGTATTGAGATGCCTGGTTT

Basic information

species Glycine max
transcript GLYMA14G04350.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G04350.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os07g46750.1 (Oryza sativa), 3'ss of exon 4
----------------------ttctattttctta-atttctcacatggactattttct-tatcgctagatcttatt------ttcttgctgaaagc--gtttg---acactgtgactta-attgacattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCGACATGAAGAAGCTGGAAGAGGCTGTCCGTAGTATTGAGATGCCTGGTTT
                         | ||  | || ||     ||| | | || ||  | ||| || |  |  | ||      || || |  |  ||  ||||    |   | || || | |   |   |||||||| || || || ||||||||  | ||||| || || |||||||| ||||| || ||||||||| |||| ||||||||||| ||| |  |||||   ||| |
gtaagaataagttcagcattaaaattgttaccctacatagtgaacaagaattacttgttatatggccatgttgtgttcaattgtttttacccattgctagtttatatatcttttgtctaacaacaaagctttatagGCGGAAAATCATCTGTCCTGTTGGATGTCAAACCATGGGACGACGAGACTGATATGAAGAAGTTGGAGGAGGCTGTCCGCAGTGTGCAGATGGAGGGTCT

upper sequence: GLYMA14G04350.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G439201_T01 (Zea mays), 3'ss of exon 2
--------------------------------------------ttctattttcttaatttctcacatggactattt---tcttatcgctagatcttat--------tttcttgctgaaa-----------gcgtttgaca-ctgtgacttaattgacat---tttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCGACATGAAGAAGCTGGAAGAGGCTGTCCGTAGTATTGAGATGCCTGGTTT
                                            |   ||  | |  ||||     |    || |||   |||| |   |   ||||||        |||||||| ||||           |   |||| |  | | | |   ||  |||   |||| |||||| || || || |||||| | ||||| || || |||||||||||||| || |||||||||||||| ||||||||||| ||| |  |||||   ||| |
gtatgcataattttcatttaggagtgttaacctacattgtctcttataatcatttggattttatgtagaacctgtttaggtcttgttagtgtttcttataatcactttttcttgcagaaacttgacttttaggacttgatagttattaatggctttgcatatatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT

upper sequence: GLYMA14G04350.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G19510.1 (Arabidopsis thaliana), 3'ss of exon 4
--------ttctatt---ttcttaatttctcacatggac-tattttcttatcgctagatcttattttcttgctgaaagcgtttgacactgtgacttaatt--gacattttat-agGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCGACATGAAGAAGCTGGAAGAGGCTGTCCGTAGTATTGAGATGCCTGGTTT
         |  |||   |||   | | |  | |    | | |    |  |  ||  ||||||  || |     || |  | | || || |     | ||   ||  ||| | |||||| ||||||||||| ||  | ||||||||||| ||||| ||||| |||||||||||||| |||||||||||||| ||| || |||||||||||||| |
gtaagcctcttaattgaattcgatagtacatatacaagcatgtgaattagtaactgcatcttaaattttaat--aagggttctaactctcttttgaattttgaactctttgttagGTGGAAAGTCTTCTGTGCTCATGGATGTTAAGCCATGGGATGATGAAACCGACATGAAGAAACTGGAAGAGGCTGTTCGTGGTGTTGAGATGCCTGGTCT

upper sequence: GLYMA14G04350.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G12110.1 (Arabidopsis thaliana), 3'ss of exon 4
--------ttctattttcttaatttc--tcac-atggactattttctt----atcgctaga-tcttattttcttgctgaaagc-gtttgacactgtga--cttaattgacatttta--tagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCGACATGAAGAAGCTGGAAGAGGCTGTCCGTAGTATTGAGATGCCTGGTTT
        |||| |   |||   ||   ||||  ||||||||| |  |    || | |||| ||||    || |||| |     | ||     ||| |  ||   || || ||||   ||||||| || |||||||| || || || || || || ||||| ||||| ||||||||||||||| | ||||| ||||| |||||| || ||||||| ||| |
gtaagtctttctctaaacttggattggatcactgtggactattatagtgtaaattgttagaatcttgagatcctgctcatgtttggttacttttgttattctcttttaacttttttgttagGTGGAAAATCTTCTGTGCTACTGGAAGTAAAACCATGGGATGATGAAACCGACATGAAGAAGTTAGAAGAAGCTGTTCGTAGTGTTCAGATGCCAGGTCT

upper sequence: GLYMA14G04350.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0009g02410.t01 (Vitis vinifera), 3'ss of exon 4
-ttctattttcttaatttctcacatggactattttcttatcgctagatcttattttcttgctgaaagcgtttgacactgtgactt---aattgacattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCGACATGAAGAAGCTGGAAGAGGCTGTCCGTAGTATTGAGATGCCTGGTTT
     || | |||  |   | |  |||  | |||  || |   |  ||  | | |   | || | ||| ||||||  | | | ||   |||||  || |  ||||||| || || ||||| ||| | ||||| || |||||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||| ||  |
tgataatgtccttggtaaatta--tggcatgtttggttgtt-ttcaatagtttctggattcttatagcatttgaccattttattttctaattg-tatctattagGTGGAAAATCGTCTGTTCTTTTGGATGTGAAACCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTATTGAGATGCCAGGCCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815213|gb|BI787488.1|BI787488
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|21677777|gb|BQ630128.1|BQ630128
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|31465054|gb|CD407082.1|CD407082
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|192308494|gb|FK002838.1|FK002838
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTTTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|209709859|gb|BW676485.1|BW676485
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|24136679|gb|BU927189.1|BU927189
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|209729658|gb|BW669758.1|BW669758
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAACCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|6845945|gb|AW348235.1|AW348235
EST:     TGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: TGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|151397601|gb|EV267474.1|EV267474
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|298178332|gb|HO024067.1|HO024067
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|208242512|gb|GE043344.1|GE043344
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTT
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTT
EST: gi|192308493|gb|FK002837.1|FK002837
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|12772751|gb|BG237678.1|BG237678
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|209729657|gb|BW669757.1|BW669757
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|151401666|gb|EV271479.1|EV271479
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|19935039|gb|BQ080069.1|BQ080069
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|6848226|gb|AW350516.1|AW350516
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|298164545|gb|HO014190.1|HO014190
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|31470443|gb|CD412471.1|CD412471
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|19452463|gb|BM953873.1|BM953873
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|14011624|gb|BG726546.1|BG726546
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTTGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|19054170|gb|BM732837.1|BM732837
EST:     GAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|298166606|gb|HO010045.1|HO010045
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|7146902|gb|AW508824.1|AW508824
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|14011788|gb|BG726710.1|BG726710
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|7029218|gb|AW459001.1|AW459001
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|4302478|gb|AI443339.1|AI443339
EST:     GCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|4313725|gb|AI460844.1|AI460844
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|298169070|gb|HO020430.1|HO020430
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|19269484|gb|BM885740.1|BM885740
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAANAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
EST: gi|37995272|gb|CF806861.1|CF806861
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtacgcttta ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttattttcttgctgaaagcgtttgacactgtgacttaattgacattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCGACATGAAGAAGCTGGAAGAGGCTGTCCGTAGTATTGAGATGCCTGGTTT
                                       aattgac  putative branch site (score: 3)
                                     ttaattgacattttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttctattttcttaatttctcacatggactattttcttatcgctagatcttattttcttgctgaaagcgtttgacactgtgacttaattgacattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGACGATGAGACCGACATGAAGAAGCTGGAAGAGGCTGTCCGTAGTATTGAGATGCCTGGTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - -ctcacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgactt