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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttttagtcttggcattaggcttttgtatatttccatttcctttcttaggattcaaacatggtttatttgacactgcattatgtgtttttttggttgcagACACAGTGGTGCTAGAGTTCAATCAGTACACTCCTGACTCGCGTTGGAGGAAGACAACTATAAGTAGAAAAGATCATAGAGAGGAAGGAAATGAAGCAGA

Basic information

species Glycine max
transcript GLYMA14G04080.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408290|gb|EV278098.1|EV278098
EST:     CTTGGAGTTATGCGATGGGAATGAAAATTACTGCCGTTGTCATAGTAGTG                         ACACAGTGGTGCTAGAGTTCAATCAGTACACTCCTGACTCGCGTTGGAGGA
genomic: CTTGGAGTTATGCGATGGGAATGAAAATTACTGCCGTTGTCATAGTAGTGgtgagttaat ... ttggttgcagACACAGTGGTGCTAGAGTTCAATCAGTACACTCCTGACTCGCGTTGGAGGA
EST: gi|209726760|gb|BW654851.1|BW654851
EST:     CTTGGAGTTATGCGATGGGAATGAAAATTACTGCCGTTGTCATAGTAGTG                         ACACAGTGGTGCTAGAGTTCAATCAGTACACTCCTGACTCGCGTTGGAGGA
genomic: CTTGGAGTTATGCGATGGGAATGAAAATTACTGCCGTTGTCATAGTAGTGgtgagttaat ... ttggttgcagACACAGTGGTGCTAGAGTTCAATCAGTACACTCCTGACTCGCGTTGGAGGA
EST: gi|6725789|gb|AW310188.1|AW310188
EST:     CTTGGAGTTATGCGATGGGAATGAAAATTACTGCCGTTGTCATAGTAGTG                         ACACAGTGGTGCTAGAGTTCAATCAGTACACTCCTGACTCGCGTTGGAGGA
genomic: CTTGGAGTTATGCGATGGGAATGAAAATTACTGCCGTTGTCATAGTAGTGgtgagttaat ... ttggttgcagACACAGTGGTGCTAGAGTTCAATCAGTACACTCCTGACTCGCGTTGGAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaggattcaaacatggtttatttgacactgcattatgtgtttttttggttgcagACACAGTGGTGCTAGAGTTCAATCAGTACACTCCTGACTCGCGTTGGAGGAAGACAACTATAAGTAGAAAAGATCATAGAGAGGAAGGAAATGAAGCAGA
                    atttgac  putative branch site (score: 4)
                                      tgttttttt  putative PPT
                                attatgtgttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttttagtcttggcattaggcttttgtatatttccatttcctttcttaggattcaaacatggtttatttgacactgcattatgtgtttttttggttgcagACACAGTGGTGCTAGAGTTCAATCAGTACACTCCTGACTCGCGTTGGAGGAAGACAACTATAAGTAGAAAAGATCATAGAGAGGAAGGAAATGAAGCAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - -ggcatta
- - - - - - - - - -gcttttg
- - - - - - - - - - - - - - - - -ccatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - -caaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgt