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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttagtattttgaataaaatggtttgcctattattttgaaaattccaagttagaatatctctattcctttggactaactacgcactccaattctttcagCATGAAACTTTGTTTGCCGATATCGAGTTCATGCAAAAGCGG

Basic information

species Glycine max
transcript GLYMA14G03100.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207806015|gb|GD779192.1|GD779192
EST:     ACCTGGAGAGTAGACTGGAGAAAGGTTTAAGCAGAGTTAGATCCAGAAAG                         CATGAAACTTTGTTTGCCGATATCGAGTTCATGCAAAAGCGG
genomic: ACCTGGAGAGTAGACTGGAGAAAGGTTTAAGCAGAGTTAGATCCAGAAAGgtattatact ... attctttcagCATGAAACTTTGTTTGCCGATATCGAGTTCATGCAAAAGCGG
EST: gi|208178707|gb|GD977876.1|GD977876
EST:     ACCTGGAGAGTAGACTGGAGAAAGGTTTAAGCAGAGTTAGATCCAGAAAG                         CATGAAACTTTGTTTGCCGATATCGAGTTCATGCAAAAGCGG
genomic: ACCTGGAGAGTAGACTGGAGAAAGGTTTAAGCAGAGTTAGATCCAGAAAGgtattatact ... attctttcagCATGAAACTTTGTTTGCCGATATCGAGTTCATGCAAAAGCGG
EST: gi|208272616|gb|GE067942.1|GE067942
EST:     ACCTGGAGAGTAGGCTGGAGAAAGGTTTAAGCAGAGTTAGATCCAGAAAG                         CATGAAACTTTG
genomic: ACCTGGAGAGTAGACTGGAGAAAGGTTTAAGCAGAGTTAGATCCAGAAAGgtattatact ... attctttcagCATGAAACTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaagttagaatatctctattcctttggactaactacgcactccaattctttcagCATGAAACTTTGTTTGCCGATATCGAGTTCATGCAAAAGCGG
                           gactaac  putative branch site (score: 1)
                                              ttctttc  putative PPT
     ttagaatat  TA-rich tract