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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttggtctacttatgcaatctgttgtttcattcatgtcaattactcaattggatattcagttctcaatttttattctcatcgtggattttgtttcttggtgtatgtttatcagAAAGGCATTTCATTATGAGCTTACATTACTTGAGAAAATAAGGCATCCAAATGTAGTCCAGTTTTTGGGTGCTGTAACACAAAGCACACCAATGATGATT

Basic information

species Glycine max
transcript GLYMA14G03040.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03040.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g54480.1 (Oryza sativa), 3'ss of exon 4
gtgggttggtctacttatgcaat------ctgttgtttcattcatgtcaatt-actcaattggatattcagttctcaatttttattctcatcgtggattttgtttcttggtgtatgtttatcagAAAGGCATTTCATTATGAGCTTACATTACTTGAGAAAATAAGGCATCCAAATGTAGTCCAGTTTTTGGGTGCTGTAACACAAAGCACACCAATGATGATT
||||||||||    ||  | | |       |  ||||| | || | |   || ||| ||||| | | || ||    ||  | || |  | |    ||||   ||    ||| |   ||   |||| | |||||     ||||||||    | ||  |   |||| ||||||| ||||| || || ||||| |||||||||||||||||||  ||||||||||||
gtgggttggttccattgagtagtattcagttactgttttactcgtcttttttcacttaattgtagactccgtctgaaaaatgtagttccctgacagattagatt----ggtttgcattg--cagACAAGCATTCAGAGATGAGCTTGATGTGCTACAACTAATACGGCATCCGAATGTCGTGCAATTTTTAGGTGCTGTAACACAAAGCAGCCCAATGATGATT

upper sequence: GLYMA14G03040.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G045366_T01 (Zea mays), 3'ss of exon 4
gtgggttggtctacttatgcaatctgttgtttcattcatgtcaattactcaattggatattcagttctcaatttttattctcatcgtggattttgtttcttggtgtatgtttatcagAAAGGCATTTCATTATGAGCTTACATTACTTGAGAAAATAAGGCATCCAAATGTAGTCCAGTTTTTGGGTGCTGTAACACAAAGCACACCAATGATGATT
                               |   |  | || | |  |   | |  |||   |   | | |||    |   ||     ||  || |  ||  || |||  |  |||  |||||||     | ||||||    | ||  |    ||| | ||||||||||| || || |||||||| ||||| ||||||||||  ||||||||||||
------------------------------gtgggtagtttccacttgtttctggtctatgttggctttattttacccttctatt----atcctgatagtt--tggatgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAATGTTGTGCAATTTTTGGGCGCTGTGACACAAAGCAATCCAATGATGATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12774326|gb|BG239253.1|BG239253
EST:     GTTGCTGTCAAGACACTTGGGGAGGAATTGTTCACTGATGATGACAAAGT                         AAAGGCATTTCATTATGAGCTTACATTACTTGAGAAAATAAGGCATCCAAA
genomic: GTTGCTGTCAAGACACTTGGGGAGGAATTGTTCACTGATGATGACAAAGTgtgggttggt ... tgtttatcagAAAGGCATTTCATTATGAGCTTACATTACTTGAGAAAATAAGGCATCCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttctcaatttttattctcatcgtggattttgtttcttggtgtatgtttatcagAAAGGCATTTCATTATGAGCTTACATTACTTGAGAAAATAAGGCATCCAAATGTAGTCCAGTTTTTGGGTGCTGTAACACAAAGCACACCAATGATGATT
       aatttttattctcat  TA-rich tract