1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctgcatcatacagttctttaattaatagctattaattagcatgtaactgtatgatttgattttgcttgtagtgttgatttccctgtgatctatatcgcagATATACTCAAGGACACCTAACCCTGGACCTGAATTTATACAGAAGTACAAGTCTTACCTTGCAAACTATGGATATGATCCAAGCAAAATTAAAGATACAC
species | Glycine max |
transcript | GLYMA14G02880.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGACAATTTTTCTCTTGTTTCCGGAGCTAAGGATCAAAGTTTTATTCAG ATATACTCAAGGACACCTAACCCTGGACCTGAATTTATACAGAAGTACAAGEST: gi|58018124|gb|CX704866.1|CX704866
genomic: ATGACAATTTTTCTCTTGTTTCCGGAGCTAAGGATCAAAGTTTTATTCAGgtatttactg ... tatatcgcagATATACTCAAGGACACCTAACCCTGGACCTGAATTTATACAGAAGTACAAG
EST: ATGACAATTTTTCTCTTGTTTCCGGAGCTAAGGATCAAAGTTTTATTCAG ATATACTCAAGGACACCTAACCCTGGACCTGAATTTATACAGAAGTACAAGEST: gi|151397681|gb|EV267554.1|EV267554
genomic: ATGACAATTTTTCTCTTGTTTCCGGAGCTAAGGATCAAAGTTTTATTCAGgtatttactg ... tatatcgcagATATACTCAAGGACACCTAACCCTGGACCTGAATTTATACAGAAGTACAAG
EST: TGACAATTTTTCTCTTGTTTCCCGGAGCTAAGGATCAAAGTTTTATTCAG ATATACTCAAGGACACCTAACCCTGGACCTGAATTTATACAEST: gi|192298179|gb|FG991684.1|FG991684
genomic: TGACAATTTTTCTCTTGTTTCC-GGAGCTAAGGATCAAAGTTTTATTCAGgtatttactg ... tatatcgcagATATACTCAAGGACACCTAACCCTGGACCTGAATTTATACA
EST: ATGACAATTTTTCTCTTGTTTCCGGAGCTAAGGATCAAAGTTTTATTCAG ATATACTCAAGGACACCTAACCCTGGACCTGAATTTATACAGAAGTACAAGEST: gi|58015930|gb|CX702672.1|CX702672
genomic: ATGACAATTTTTCTCTTGTTTCCGGAGCTAAGGATCAAAGTTTTATTCAGgtatttactg ... tatatcgcagATATACTCAAGGACACCTAACCCTGGACCTGAATTTATACAGAAGTACAAG
EST: ATGACAATTTTTCTCTTGTTTCCGGAGCTAAGGATCAAAGTTTTATTCAG ATATACTCAAGGACACCTAACCCTGGACCTGAATTTATACAGAAGTACAAGEST: gi|57574781|gb|CX547756.1|CX547756
genomic: ATGACAATTTTTCTCTTGTTTCCGGAGCTAAGGATCAAAGTTTTATTCAGgtatttactg ... tatatcgcagATATACTCAAGGACACCTAACCCTGGACCTGAATTTATACAGAAGTACAAG
EST: ATGACAATTTTTCTCTTGTTTCCGGAGCTAAGGATCAAAGTTTTATTCAG ATATACTCAAGGACACCTAACCCTGGACCTGAATTTATACAGAAGTACAAG
genomic: ATGACAATTTTTCTCTTGTTTCCGGAGCTAAGGATCAAAGTTTTATTCAGgtatttactg ... tatatcgcagATATACTCAAGGACACCTAACCCTGGACCTGAATTTATACAGAAGTACAAG
actgtatgatttgattttgcttgtagtgttgatttccctgtgatctatatcgcagATATACTCAAGGACACCTAACCCTGGACCTGAATTTATACAGAAGTACAAGTCTTACCTTGCAAACTATGGATATGATCCAAGCAAAATTAAAGATACAC
atttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcatcatacagttctttaattaatagctattaattagcatgtaactgtatgatttgattttgcttgtagtgttgatttccctgtgatctatatcgcagATATACTCAAGGACACCTAACCCTGGACCTGAATTTATACAGAAGTACAAGTCTTACCTTGCAAACTATGGATATGATCCAAGCAAAATTAAAGATACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
ctgcatc
- - - - - - - - - - - - - - - - - - - gcatgta
- - - - - - - - - - - - - - - - - - - - - - - -tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgttg