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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaagaatgctaatattgtcagaatgtcagccaaagccaacaatttcttcaggcagattatattaactattctcacttatttaacttctccaatctccagATATGATGTCCTTGTTGATATTGCACCAGAAATCAAATGGATTCCCGATAATAATGCATACAAAAATTTAAAGATTGTTGTTGAGATAGATAGTGATATA

Basic information

species Glycine max
transcript GLYMA14G02220.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G02220.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0090g01210.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------------------------------------------------------------------ttaagaatg-ctaatattgtcagaatgtcagccaaagccaaca----atttcttcaggcagattatat---taactattctcactt-atttaacttctccaatctccagATATGATGTCCTTGTTGATATTGCACCAGAAATCAAATGGATTCCCGATAATAATGCATACAAAAATTTAAAGATTGTTGTTGAGATAGATAGTGATATA---
                                                                                            || ||  |||      |   |    || ||   | |    || |||    ||||  || ||   ||| ||||   |  | |||| | || |      || ||||||||| || |||||||| | ||||| ||| |||||||| |||| || |   ||| |||||| || || |||||||||||||||||||| ||||| |||   
gtatgttagatatgcatcttttatggcacttttcatttgcaagctgatatcagtttcttattacagcaatacacacaattgctacccgtcgctgtcttctatctctgtagcattgaacagagaggagacagcatatctatttgcagtatacatgcataaatatttggatctgatttgatttgt----ggtctagATATGATATCATTGTTGATGTGGCACCTGAAGTCAAATGGGTTCCTGAAA---ATGGATACAAGAACTTGAAGATTGTTGTTGAGATAGACAGTGACATAGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcaggcagattatattaactattctcacttatttaacttctccaatctccagATATGATGTCCTTGTTGATATTGCACCAGAAATCAAATGGATTCCCGATAATAATGCATACAAAAATTTAAAGATTGTTGTTGAGATAGATAGTGATATA
                                       cttctccaatctcc  CT-rich tract
           attatattaactattc  TA-rich tract