Sequence
atgc intronic sequence ATGC exonic sequencegtaattctgttataatgttcaataatgagtcagttcagtttgtcactactttggaaaattccttttgatttcatttactaaacagctcattgagagttttgttgcattgccttgtttggcagAGTGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACTGTGCATGATCTATGTGCTGTCCTTGGTATGGACTTCTTCAGTACTGCAACTGAGGTTCATC
Basic information
species | Glycine max |
transcript | GLYMA14G02180.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G02180.3 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os06g40840.1 (Oryza sativa), 3'ss of exon 4
gtaattctgttataatgttcaataatgagtcagttcagtttgtcactactttggaaaattccttttgatttcatttactaaacagctcattgagagttttgttgcattgccttgtttggcagAGTGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACTGTGCATGATCTATGTGCTGTCCTTGGTATGGACTTCTTCAGTACTGCAACTGAGGTTCATC
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----------tgatatagctgatgataa-tctttgcattatacacacattttcgactatt----taaaatttattgacttgaaatcgtatt-------tctttccattttcttgcattgcagAGCAATAGACTGCACAAGATTCTTGACTTCGTGAGTTCAGTGCATGATCTCTGTTCTGTCCTTGGGATGGATTTCCTGAGCACTGTTACTGAAGTTCATC
upper sequence: GLYMA14G02180.3 (Glycine max), 3'ss of exon 4
lower sequence: AT4G26760.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaattctgttataatgttcaataatgagtcagttcagtttgtcactactttggaaaattccttttgatttcatttactaaacagctcattgagagttttgttgcattgccttgtttggcagAGTGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACTGTGCATGATCTATGTGCTGTCCTTGGTATGGACTTCTTCAGTACTGCAACTGAGGTTCATC
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-------------------------------------gtaaaatattagtt-gggatatggttatgtgtggcctatgttcaa------accagaactaaaactgctttgtgt--ttgagcagAGTGATAGGTTACAGAAGGTGCTCGAGTTTGTGAGCACGGTGCATGATCTATGTGCCGTCCTTCGTTTAGATTTCTTAAGCACTGTCACCGAAGTTCATC
upper sequence: GLYMA14G02180.3 (Glycine max), 3'ss of exon 4
lower sequence: AT5G55230.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaattctgttataatgttcaataatgagtcagttcagtttgtcactactttggaaaattccttttgatttcatttactaaacagctcattgagagttttgttgc--attgccttgttt-ggcagAGTGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACTGTGCATGATCTATGTGCTGTCCTTGGTATGGACTTCTTCAGTACTGCAACTGAGGTTCATC
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--------------------------------------gtaaacattgagttagaaatctccgt--------atatgatatgttgcttat----gttttccttaccaactgctctgttttggcagAGTGACAGGCTGCGCAAGGTGTTAGAGTTTGTGAGTACTGTTCATGATCTATGTGCTGTTCTTGGTTTGGATTTCTTAAGCACCGTCACCGAAGTTCATC
upper sequence: GLYMA14G02180.3 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0090g01230.t01 (Vitis vinifera), 3'ss of exon 3
gtaattctgttataatgttcaataatgagtcagttcagtttgtcactactttggaaaattccttttgatttcatttactaaacagctcattgagagttttgttgcattgccttgtttggcagAGTGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACTGTGCATGATCTATGTGCTGTCCTTGGTATGGACTTCTTCAGTACTGCAACTGAGGTTCATC
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----------------gtaaaattatagatcagttcacactat-attagttatggacttttatgctagcc-catatgtcttcaggatcaccaccaatt------aattatttgatctgccagAGTGACAGGTTGCACAAGGTCCTTGAGTTTGTGAGCACTGTTCATGATCTATGTGCTGTCCTTGGGATGGACTTCTTTAATACTGTTACTGAAGTTCATCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7147025|gb|AW508947.1|AW508947EST: AGAAGTTGGATGAATATCAATCTGAGCTCCAAGAACTTCAAAAGGAAAAG AGTGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACTGTGCATGATCTA
genomic: AGAAGTTGGATGAATATCAATCTGAGCTCCAAGAACTTCAAAAGGAAAAGgtaattctgt ... tgtttggcagAGTGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACTGTGCATGATCTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttcatttactaaacagctcattgagagttttgttgcattgccttgtttggcagAGTGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACTGTGCATGATCTATGTGCTGTCCTTGGTATGGACTTCTTCAGTACTGCAACTGAGGTTCATC
tactaaa putative branch site (score: 1)
ccttgttt putative PPT
atttactaaa TA-rich tract