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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaaattagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT

Basic information

species Glycine max
transcript GLYMA14G01290.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os08g25734.1 (Oryza sativa), 3'ss of exon 4
----gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaaattagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
    |  |  |  | ||                                                                                                    |  ||||| || ||| ||         |||  | |   ||| || |||   |  || | |    || |||||   | |   ||||| |||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||| || ||||||||||| || || |
gtatggaaagctcgctgtttagtagccttttgttttcttcagtttattactgctgcttttatgattgttagcatttgaccttctctcactgaaatattgtcatggcatatgtaataaattacttttttattactt---------gtaggtca-tgtgctatatttgctgcttaagaatc-tatttttgt---tgtctgcagGTACAAGCTTACTTGTATGATGGTTACTGGGAAGACATTGGTACCATTGAGGCATTCTATAATGCAAATCTGGGAATAACGAAAAAGCCTGTACCAGATT

upper sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os09g12660.2 (Oryza sativa), 3'ss of exon 4
gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaaattagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
||      || |                                                                                                      |||   | ||  |  ||| ||  ||  | | || |||||   |||  |     ||||       || |  ||| | || | |||||||||||||||| |||||||| ||||||||||| |||||||| || ||||| ||||| ||||| ||  |||| || ||||| || |||||||| || |
gtacgctatgctcttgaaacttgtagcatgtagggaatttttatccttctctcagttcatgctgtaggttttgtgaagtttggtatgtaaactgcagttacatcatttattgtgaaa---tgttacttctttacttaatttttactttgcatg---tttgct-----tatgc------tgctaatgtat-ttgatagGTGCAAGCTTACTTATATGATGGTTACTGGGAAGATATTGGTACTATAGAGGCATTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATT

upper sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G106213_T01 (Zea mays), 3'ss of exon 4
gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaaattagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
||     ||| |                                                                                                     || | ||   |  ||   |  |   | ||         ||| || |||   |  ||||      |||||  ||||| |  | |||||||||||||||| |||||||| ||||||||||| |||||||| || || || || |||||||||||  ||||||| ||||| |||||||| || || |
gtatgctctgctcttgagctttcttggtttctcttctccagtttttgtttttatcattctggatttatgatttgggcatttcggttgaaagattttaatttcatcatttattgaagatttggct--tagcctttttagtagt---------tgctatgttt---gcttatg------atgttgttgtgt-tcaaaagGTGCAAGCTTACTTATATGATGGTTACTGGGAAGATATTGGTACTATTGAAGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATT

upper sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G163437_T01 (Zea mays), 3'ss of exon 4
gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaaattagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
                                                                                                                 || || || || || | |                                                               ||||| || |||||  | |||||||| || |||||||| ||||||||||| ||||| || |||||||||||  ||||||| ||||| |||||  | || || |
-----------------------------------catgctagaaagcctaggcaggttgggttggctcaaggccggagggagggaagggttacaccttttaaaatggtatttaagaccttatttttgtct--------------------------------------------------------------gcagGTTCAGGCTTATCTATATGATGGTTATTGGGAAGATATTGGTACAATTGAGGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATT

upper sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G068506_T03 (Zea mays), 3'ss of exon 4
gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaaattagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
                                                                                                                 || || || || || |||                                                               ||||| || |||||  |||||||||| ||||||||||| || ||||| || | ||| || |||||||||||  ||||||| ||||| |||||  | || || |
-----------------------------------agcttactagaaagcctaggcaggttgggttgtctcaaggcaggatggaaggaagggttgcctttcagaatggaatttaagaccttatttttgttt--------------------------------------------------------------gcagGTTCAGGCTTATCTGTATGATGGTTACTGGGAAGATATCGGTACCATTGCGGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATT

upper sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0057g01480.t01 (Vitis vinifera), 3'ss of exon 4
gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaaattagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
                                                                                                                 |||              || ||||||                                      || | |||          ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||| |||| ||||| || ||||| ||||| || |
------------------------------------tatgatcactggaaattccgataatcaaaatgttattttatctgcatttgccttcttaagagaactttcatagagtcaaa--------------ttgctgcata-------------------------------------atctctgt----------agGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTTTATAACGCTAATTTGGGGATCACAAAGAAGCCGGTGCCAGATT

upper sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S2_337V6.1 (Physcomitrella patens), 3'ss of exon 4
gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaaattagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
                                                                                                                 || |                                                                             |||||||| || ||||| | |||||||||||||||||| ||||| || || || ||||| || || |||||  | |||||||| || ||||| || ||||| |
---------------------atttagcgctgattaaagaagccgacctttcaacgtcatcatatgcctttcattcgtaactccaagtatcttgccaaatgctaatactaggtaatat----------------------------------------------------------------------------cagGTGCAGGCCTACTTATTTGATGGCTACTGGGAAGATATTGGAACTATTGAAGCTTTTTACAACGCAAACTTAGGAATCACGAAGAAGCCCGTTCCTGATT

upper sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S76_105V6.1 (Physcomitrella patens), 3'ss of exon 4
gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaaattagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
                                                                                                                 | ||  || ||||| |                                                  |||| |         ||||| |||||||| ||||| ||||||||||||||||| ||||| || || || || ||||| ||||| |||||||| ||||| || || ||||| ||||| |
--------------------------------------gtagggtgagctgtgaatttccatacaacctcagccattggaggtaataaatagtagttgtacgtaatgttcctgagaagatttttgttct--------------------------------------------------gtttat---------cagGTTCAAGCTTATTTGTACGATGGCTACTGGGAAGATATTGGAACTATTGAAGCATTCTACAATGCCAATCTGGGCATCACTAAGAAACCTGTTCCTGATT

upper sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S2_392V6.1 (Physcomitrella patens), 3'ss of exon 4
gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaaattagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
                                                                                                                 |                                                                   ||||||       ||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| || || ||| |||| |||||||| ||||| ||||| || |
-------------------------gaatattcggagatatctccaaaggttgtctgtgaacgtgatgttcagtggcaatgacccgcattgttcccaattgtattgtgactgga-------------------------------------------------------------------ttgtgtac-----cagGTTCAAGCGTACTTGTATGATGGCTACTGGGAAGACATCGGTACTATCGAGGCTTTCTACAACGCGAATTTGGGCATCACCAAGAAGCCCGTGCCAGATT

upper sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S239_45V6.1 (Physcomitrella patens), 3'ss of exon 4
gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaaattagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
                                                                                                                 ||| |                                                                     |||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| || ||||| || ||||| ||||||||  | || ||||| || |||||||| |||||||
---------------------------gtattgaaaactttcgtaaggtccactcccgaaaatgtgaccgtcattggcaatggccagtacttttcctagagatatttgattctaaatc---------------------------------------------------------------------gtattc-cagGTTCAAGCCTACTTGTATGACGGCTACTGGGAAGATATTGGAACTATCGAAGCCTTCTACAATGCAAACTTAGGCATCACGAAGAAGCCTGTTCCTGACT

upper sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ16157 (Selaginella moellendorffii), 3'ss of exon 4
gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaaattagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
          ||                                                                                                        ||| |   |  ||||| |  ||||  || |||| || ||        |  |         ||   |                                                                                                                   
----------gt-ttgtttttgctctgaagggatcgaaacgaacgtgacttaaacaatactctgttcgttgcagGTGCAAGCGTATTTGTATGATGGATACTGGGAAGACATAGGGACTATAGAGGCATTTTAC--CATGCCAACTTAGGATTCA------CAAAGAAGCCCGTTCCAAACT-------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ18043 (Selaginella moellendorffii), 3'ss of exon 4
gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaa-attagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
          ||                                                                                                     |  |  ||      ||         |   ||    | |||   |||   | |||     | | | || |                                                                                                                    
----------gtaagttttttttcttcttttgtgtctctctcaagcctttgtgattttttaatcttttgttctactttctagGTACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAAGAGCCC-TCCTGAATTTA-------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ09564 (Selaginella moellendorffii), 3'ss of exon 3
----gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaaattagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
    ||  ||  |  |                                                                                                       |   || ||   ||        | | |  | ||    |     |  |||   ||                                                                                                                                
gtaagtttttttttcttttgtgtctctctcaagcctttgtgattttttaatcttttgttctactttctagGTACAAGCCTACCTGTTTGATGGATACTGGGAGGATATTGGCACAATCGAGGCTTTTTACAATGCCAACATAGGATTGACTAA---GAGCCCTCCTGAATTTA--------------------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA14G01290.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ17026 (Selaginella moellendorffii), 3'ss of exon 4
gtgattcctggtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaactttcttgttattttcctgcatggtaaattagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
          ||                                                                                                        ||| |   |  ||||| |  ||||  || |||| || ||        |  |         ||   |                                                                                                                   
----------gt-ttgtttttgctctgaagggatcgaaacgaacgtgacttaaacaatgctctgttcgtcgcagGTGCAAGCGTATTTGTATGATGGATACTGGGAAGACATAGGGACTATAGAGGCATTTTAC--CATGCCAACTTAGGATTCA------CAAAGAAGCCCGTTCCAAACT-------------------------------------------------------------------------------------------------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaattagcatgcaattttttgagaatatgtacggcatgtttgtgtgtattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
            aattttttgagaatat  TA-rich tract