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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgacattttttaaaacttctgttaatctaacttcggtgaaattgtcagaaaactatttagacatattaggatatattttttaaatctcaactcattcagtaggtgatttattcactaaccaatcattaacccattgtacctagtaaaaagctatgtctgactgtcatctaactcctctttaaacatcgcagTTCTCTGGTATAAATGTGGTGCTCTACTATACACCTCAAATTCTTGAGCAGGCAGGTGTTGGTTATCTTCTTTCAAACCTGGGCCTCGGTTCTACTTCTG

Basic information

species Glycine max
transcript GLYMA14G00330.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G00330.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0038g03940.t01 (Vitis vinifera), 3'ss of exon 3
gtaatgacattttttaaaacttctgttaatctaacttcggtgaaattgtcagaaaactatttagacatattaggatatattttttaaatctcaactcattcagtaggtgatttattcactaaccaatcattaacccattgtacctagtaaaaagctatgtctgactgtcatct--aactcctctttaaacatcgcagTTCTCTGGTATAAATGTGGTGCTCTACTATACACCTCAAATTCTTGAGCAGGCAGGTGTTGGTTATCTTCTTTCAAACCTGGGCCTCGGTTCTACTTCTG
                                                                                     || |||   |    | |   |   |  ||||   ||| |     ||||     |||  ||  |         || ||| ||||| |||  || |  |  ||    || |||||||||||| ||||||| ||| || ||||| || |||||||||||||||||||||||||||||   | ||||||||||| | ||| |  ||||  | ||| 
-------------------------------------------------------------------------------------aactcttctcatgatgatgggagaaaatattggataaac-----ttaattttctgtttctttttg------ttggctggctgtcttcttaaattattgcttgtttat-gcagTTCTCTGGCATAAATGGGGTTCTGTACTACACTCCTCAAATTCTTGAGCAGGCAGGTGTTGGAGTTATTCTTTCAAACATAGGCATTAGTTCAGCCTCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10847448|gb|BF070135.1|BF070135
EST:     AGTGAAGCATGCACTGATTGTGNGGGGTGGG-ATTCAAATTCTTCAACAG                         TTCTCTGGTATAAATGTGGTGCTCTACTATACACCTC
genomic: AGTGAAGCATGCACTGATTGTG-GGGGTGGGGATTCAAATTCTTCAACAGgtaatgacat ... aacatcgcagTTCTCTGGTATAAATGTGGTGCTCTACTATACACCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacctagtaaaaagctatgtctgactgtcatctaactcctctttaaacatcgcagTTCTCTGGTATAAATGTGGTGCTCTACTATACACCTCAAATTCTTGAGCAGGCAGGTGTTGGTTATCTTCTTTCAAACCTGGGCCTCGGTTCTACTTCTG
                             atctaac  putative branch site (score: 2)
                                         tttaaacat  TA-rich tract