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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatatcatcaccccattcatttctgcttcctcctgatgtcacagacttcacattgtagtccgcctttgcaacagGCAGCTGCTGTTGTCAATTCTGGGTTACTCTTGATGGCTGTAATGGGAATACTATTTCCTGCTGTGCTTTACTTTACTCACTCCGAAGTTCATCAAGGGA

Basic information

species Glycine max
transcript GLYMA13G44960.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G44960.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os04g55940.1 (Oryza sativa), 3'ss of exon 5
gtacatatcat-caccccatt-catttctgcttcctcctgatgtcacagacttcacattgtagtccgcctttgcaacagGCAGCTGCTGTTGTCAATTCTGGGTTACTCTTGATGGCTGTAATGGGAATACTATTTCCTGCTGTGCTTTACTTTACTCACTCCGAAGTTCATCAAGGGA
|||  | | || || |   ||     ||   | |   |  | ||  | ||  | | ||   | |     ||| | ||||||| |||| ||||| || || || ||||| ||||||||||| |||||| || | ||||||||||| ||| |||| || || || |||||    |||||  
gtaattttgatgcaacatgttgtgcgtcctttccactcaaaagttcctgatatgaaatc--aatttttatttactacagGCAACTGCAGTTGTTAACTCAGGTTTACTGTTGATGGCTGTCATGGGACTAATGTTTCCTGCTGTCCTTCACTTCACGCATTCAGAAGTGAGGCAAGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298184786|gb|HO029999.1|HO029999
EST:     TCTTTACTGGTGGCATTGTCCACTACAAAAAAGTGCAGGTTTTTGATAAG                         GCAGCTGCTGTTGTCAATTCTGGGTTACTCTTGATGGCTGTAATGGGAATA
genomic: TCTTTACTGGTGGCATTGTCCACTACAAAAAAGTGCAGGTTTTTGATAAGgtacatatca ... tttgcaacagGCAGCTGCTGTTGTCAATTCTGGGTTACTCTTGATGGCTGTAATGGGAATA
EST: gi|192328536|gb|FK020768.1|FK020768
EST:     TCTTTACTGGTGGCATTGTCCACTACAAAAAAGTGCAGGTTTTTGATAAG                         GCAGCTGCTGTTGTCAATTCTGGGTTACTCTTGATGGCTGTAATGGGAATA
genomic: TCTTTACTGGTGGCATTGTCCACTACAAAAAAGTGCAGGTTTTTGATAAGgtacatatca ... tttgcaacagGCAGCTGCTGTTGTCAATTCTGGGTTACTCTTGATGGCTGTAATGGGAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgcttcctcctgatgtcacagacttcacattgtagtccgcctttgcaacagGCAGCTGCTGTTGTCAATTCTGGGTTACTCTTGATGGCTGTAATGGGAATACTATTTCCTGCTGTGCTTTACTTTACTCACTCCGAAGTTCATCAAGGGA
           tcctgat  putative branch site (score: 3)
                                       tccgccttt  putative PPT