1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcactttcagatataaatgcgttttttacaggtttatgatgtgtactgtacctttcttagccacaaaataaggaatgtaatgagttgtggaattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCAAGTCACCGTCAGGCAAAATCTTGCGCAAGGATCTAAGAGCAAAGATAG
species | Glycine max |
transcript | GLYMA13G44950.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAG GTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCEST: gi|13311442|gb|BG405093.1|BG405093
genomic: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAGgttttttttt ... aattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
EST: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTNCAAACAG GTGGTGTTTTACAAAAGAATAAACCGAGTEST: gi|308222658|gb|HO760573.1|HO760573
genomic: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAGgttttttttt ... aattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGT
EST: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAG GTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCEST: gi|8284521|gb|BE022089.1|BE022089
genomic: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAGgttttttttt ... aattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
EST: GTTATACCGACACAACCCAGGATGAAATTAAGCAGTTTATCTCCAAACAG GTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCEST: gi|31459401|gb|CD401429.1|CD401429
genomic: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAGgttttttttt ... aattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
EST: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAG GTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCEST: gi|16348295|gb|BI973890.1|BI973890
genomic: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAGgttttttttt ... aattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
EST: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAG GTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCEST: gi|22524819|gb|BU083630.1|BU083630
genomic: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAGgttttttttt ... aattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
EST: GTTATACCGACACAACCCAGGATGAAATTAAGCAGTTTATCTCCAAACAG GTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCEST: gi|15664633|gb|BI702004.1|BI702004
genomic: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAGgttttttttt ... aattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
EST: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAG GTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCEST: gi|6847895|gb|AW350185.1|AW350185
genomic: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAGgttttttttt ... aattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
EST: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAG GTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCEST: gi|58024891|gb|CX711632.1|CX711632
genomic: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAGgttttttttt ... aattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
EST: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAG GTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
genomic: GTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAGgttttttttt ... aattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCC
ctgtacctttcttagccacaaaataaggaatgtaatgagttgtggaattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCAAGTCACCGTCAGGCAAAATCTTGCGCAAGGATCTAAGAGCAAAGATAG
acaaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcactttcagatataaatgcgttttttacaggtttatgatgtgtactgtacctttcttagccacaaaataaggaatgtaatgagttgtggaattgtgcagGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCAAGTCACCGTCAGGCAAAATCTTGCGCAAGGATCTAAGAGCAAAGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
-cactttc
- - - - - - -taaatgc
- - - - - - - - - - - - - - - - - - - -tgtgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgtgg