1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaaattgtagctattgttatgatttgtgatcctgcacaatgtggaggatgccacagcttttttattggaactttgaatgaatttctgaattttgttgcagGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAGTTACCTTGCTCTCACGTTTTTCACGTCGAATGTGTTGACAAATGGTTAA
species | Glycine max |
transcript | GLYMA13G43770.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTTGGCTGCAGGGACAGAAAAGGAGCGAATGATTTCAGGAGAAGATGCT GTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAGEST: gi|208305879|gb|GE109558.1|GE109558
genomic: TTTTGGCTGCAGGGACAGAAAAGGAGCGAATGATTTCAGGAGAAGATGCTgtaagtctaa ... tttgttgcagGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAG
EST: TTTTGGCTGCAGGGACAGAAAAGGAGCGAATGATTTCAGGAGAAGATGCT GTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAGEST: gi|192308932|gb|FK002156.1|FK002156
genomic: TTTTGGCTGCAGGGACAGAAAAGGAGCGAATGATTTCAGGAGAAGATGCTgtaagtctaa ... tttgttgcagGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAG
EST: TTTTGGCTGCAGGGACAGAAAAGGAGCGAATGATTTCAGGAGAAGATGCT GTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAG
genomic: TTTTGGCTGCAGGGACAGAAAAGGAGCGAATGATTTCAGGAGAAGATGCTgtaagtctaa ... tttgttgcagGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAG
ggatgccacagcttttttattggaactttgaatgaatttctgaattttgttgcagGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAGTTACCTTGCTCTCACGTTTTTCACGTCGAATGTGTTGACAAATGGTTAA
ttttgtt CT-rich tract
aatttctgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaattgtagctattgttatgatttgtgatcctgcacaatgtggaggatgccacagcttttttattggaactttgaatgaatttctgaattttgttgcagGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAGTTACCTTGCTCTCACGTTTTTCACGTCGAATGTGTTGACAAATGGTTAA
- - - - -gctattg
- - - - - - - - - -tgatttg
- - - - - - - - - - - - - - -tcctgca
- - - - - - - - - - - - - - - - - - caatgtg
- - - - - - - - - - - - - - - - - - - - - - -ggatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatga