1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatgattaaatctaatgtatgtatttaatcaaataaatacattatgtcagaacctcacacatgacacatataatattgatggactttttatggactgcagGATGGCCACTATGTGGAAAACCATGCTAGAGCACCATGTGAAGCAATCAGATACTGTGACATCGCTAAGAAATTTAGATATTTCCCAGTCTCCTAAGACA
species | Glycine max |
transcript | GLYMA13G43590.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
gtcagaacctcacacatgacacatataatattgatggactttttatggactgcagGATGGCCACTATGTGGAAAACCATGCTAGAGCACCATGTGAAGCAATCAGATACTGTGACATCGCTAAGAAATTTAGATATTTCCCAGTCTCCTAAGACA
tattgat putative branch site (score: 3)
ctttttat putative PPT
acatataatattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgattaaatctaatgtatgtatttaatcaaataaatacattatgtcagaacctcacacatgacacatataatattgatggactttttatggactgcagGATGGCCACTATGTGGAAAACCATGCTAGAGCACCATGTGAAGCAATCAGATACTGTGACATCGCTAAGAAATTTAGATATTTCCCAGTCTCCTAAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - -tgtatgt
- - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cacacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgatgg