1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cataaattacacttgtagttgtaccattcctatatctttgaatttgaaggataccttgtgtttttttttaatatcaatattaatatgagttttgttccagGGATGTAACAACTGATCAGCCTGAAGTTATGGTCAACTTTGTGACCTCTTCCTACAAGCCAGAGCTGTTGAAGTTCCTAGTTGATAAAGTTTCCGTATTT
species | Glycine max |
transcript | GLYMA13G42890.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTCATTCGCACAAGGGATTTCTTAAGCATTTGATGCTGAGAACGGGAAG GGGATGTAACAACTGATCAGCCTGAAGTTATGGTCAACTTTGTGACCTCTTEST: gi|18040955|gb|BM309249.1|BM309249
genomic: GTTCATTCGCACAAGGGATTTCTTAAGCATTTGATGCTGAGAACGGGAAGgtatataagt ... tttgttccagGG-ATGTAACAACTGATCAGCCTGAAGTTATGGTCAACTTTGTGACCTCTT
EST: GTTCATTCGCACAAGGGATTTCTTAAGCATTTGATGCTGAGAACGGGAAG GGATGTAACAACTGATCAGCCTGAAGTTATGGTCAACTTTGTGACCTCTTC
genomic: GTTCATTCGCACAAGGGATTTCTTAAGCATTTGATGCTGAGAACGGGAAGgtatataagt ... tttgttccagGGATGTAACAACTGATCAGCCTGAAGTTATGGTCAACTTTGTGACCTCTTC
gaaggataccttgtgtttttttttaatatcaatattaatatgagttttgttccagGGATGTAACAACTGATCAGCCTGAAGTTATGGTCAACTTTGTGACCTCTTCCTACAAGCCAGAGCTGTTGAAGTTCCTAGTTGATAAAGTTTCCGTATTT
tattaat putative branch site (score: 2)
ttttgttcc putative PPT
ttgtgtttttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cataaattacacttgtagttgtaccattcctatatctttgaatttgaaggataccttgtgtttttttttaatatcaatattaatatgagttttgttccagGGATGTAACAACTGATCAGCCTGAAGTTATGGTCAACTTTGTGACCTCTTCCTACAAGCCAGAGCTGTTGAAGTTCCTAGTTGATAAAGTTTCCGTATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG