1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgcagttgtttatagttttcaatccatatctattctttatggcatatacaaggtgctgtgtaattaggatatgcaattatgcattgcattagtcagatagttagatgaatggttttgtaagttgtaacacctatgaagccatttctatgtacccacagGCTCCAGTTTCCGGATCAAAAAAGCCAGCAGAAGATGGACAATTGATATTTCTTACAGCAG
species | Glycine max |
transcript | GLYMA13G42500.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTAAATTGATTAATGGGCACATGAAATCCACTGGAGCCTTATTTTTGGAG GCTCCAGTTTCCGGATCAAAAAAGCCAGCAGAAGATGGACAATTGATATTTEST: gi|6070905|gb|AW100292.1|AW100292
genomic: CTAAATTGATTAATGGGCACATGAAATCCACTGGAGCCTTATTTTTGGAGgtgcagttgt ... gtacccacagGCTCCAGTTTCCGGATCAAAAAAGCCAGCAGAAGATGGACAATTGATATTT
EST: CTAAATTGATTAATGGGCACATGAAATCCACTGGAGCCTTATTTTTGGAG GCTCCAGTTTCCGGATCAAAAAAGCCAGCAGAAGATGGACAATTGATATTT
genomic: CTAAATTGATTAATGGGCACATGAAATCCACTGGAGCCTTATTTTTGGAGgtgcagttgt ... gtacccacagGCTCCAGTTTCCGGATCAAAAAAGCCAGCAGAAGATGGACAATTGATATTT
gatgaatggttttgtaagttgtaacacctatgaagccatttctatgtacccacagGCTCCAGTTTCCGGATCAAAAAAGCCAGCAGAAGATGGACAATTGATATTTCTTACAGCAG
ttgtaac putative branch site (score: 2)
ttttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcagttgtttatagttttcaatccatatctattctttatggcatatacaaggtgctgtgtaattaggatatgcaattatgcattgcattagtcagatagttagatgaatggttttgtaagttgtaacacctatgaagccatttctatgtacccacagGCTCCAGTTTCCGGATCAAAAAAGCCAGCAGAAGATGGACAATTGATATTTCTTACAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA