1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttattttgttgaaatatttttctttatttaaaactcacatatgtgctagatgaagtcatcttgtgttgacattttatatttttcgtgcatgaaatgcagATCTATGACATCTTCCAGCTTCTGCCGGGTCAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCTGAGGCCTTGGAGATTACGAGGAAGTTCATGA
species | Glycine max |
transcript | GLYMA13G42360.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTTTTGGATGAGGCTGATGAAATGCTTTCTCGTGGTTTCAAGGACCAG ATCTCTGACATCTTCCAGCTTCTGCCGGGTCAAATTCAGGTTGGAGTGTTCEST: gi|15813655|gb|BI785930.1|BI785930
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCTCGTGGTTTCAAGGACCAGgtttgatggt ... tgaaatgcagATCTATGACATCTTCCAGCTTCTGCCGGGTCAAATTCAGGTTGGAGTGTTC
EST: TTGTTTTGGATGAGGCTGATGAAATGCTTTCTCGTGGTTTCAAGGACCAG ATCTATGACATCTTCCAGCTTCTGCCGGGTCAAATTCAGGTTGGAGTGTTCEST: gi|192306617|gb|FG998813.1|FG998813
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCTCGTGGTTTCAAGGACCAGgtttgatggt ... tgaaatgcagATCTATGACATCTTCCAGCTTCTGCCGGGTCAAATTCAGGTTGGAGTGTTC
EST: TTGTTTTGGATGAGGCTGATGAAATGCTTTCTCGTGGTTTCAAGGACCAG ATCTATGACATCTTCCAGCTTCTGCCGGGTCAAATTCAGGTTGGAGTGTTCEST: gi|254347906|gb|GR854155.1|GR854155
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCTCGTGGTTTCAAGGACCAGgtttgatggt ... tgaaatgcagATCTATGACATCTTCCAGCTTCTGCCGGGTCAAATTCAGGTTGGAGTGTTC
EST: TTGTTTTGGATGAGGCTGATGAAATGCTTTCTCGTGGTTTCAAGGACCAG ATCTATGACATCTTCCAGCTTCTGCCGGGTCAAATTCAGGTTGGAGTGT-CEST: gi|209726515|gb|BW658082.1|BW658082
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCTCGTGGTTTCAAGGACCAGgtttgatggt ... tgaaatgcagATCTATGACATCTTCCAGCTTCTGCCGGGTCAAATTCAGGTTGGAGTGTTC
EST: TTGTTTTGGATGAGGCTGATGAAATGCTTTCTCGTGGTTTCAAGGACCAG ATCTATGACATC
genomic: TTGTTTTGGATGAGGCTGATGAAATGCTTTCTCGTGGTTTCAAGGACCAGgtttgatggt ... tgaaatgcagATCTATGACATC
gctagatgaagtcatcttgtgttgacattttatatttttcgtgcatgaaatgcagATCTATGACATCTTCCAGCTTCTGCCGGGTCAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCTGAGGCCTTGGAGATTACGAGGAAGTTCATGA
tgttgac putative branch site (score: 3)
ttgacattttatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattttgttgaaatatttttctttatttaaaactcacatatgtgctagatgaagtcatcttgtgttgacattttatatttttcgtgcatgaaatgcagATCTATGACATCTTCCAGCTTCTGCCGGGTCAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCTGAGGCCTTGGAGATTACGAGGAAGTTCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - -tgttgaa
- - - - - - - - - - - - - - - - - ctcacat
- - - - - - - - - - - - - - - - - - - - - -gtgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgac