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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacatactgtcttcttttatcatgcatatgtactagtattacttgctattgttttgagtatcctttacttgtttggttctcatggtgtaatgtgtttatctccaagccttgggatatgagctttcttcttattttaaatttatatttacccatcaatactttgaatttacccttgtaatctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCACCTA

Basic information

species Glycine max
transcript GLYMA13G41520.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41520.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os03g31550.1 (Oryza sativa), 3'ss of exon 3
gtgacatactgtcttcttttatcatgcatatgtactagtattacttgctattgttttgagtatcctttacttgtttggttctcatggtgtaatgt-gtttatctccaagccttgggatatgagctttcttcttattttaaatttatatttaccc---atcaatactttgaatttacccttgtaatctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCACCTA
                                                                                           ||||  |   | ||  |  | ||   | | |  ||  | |||   |   | |   |||| | |   ||||  |  || |  |   |  ||   ||  | ||||||    | ||   ||| || |||||||||||||||||||| || ||||||||||| ||||| |||||||||||  |  | |||||| ||   || ||||
-------------------------------------------------------------------------------------------atgtcatcagtttctgaatcctgtattttcactttcatcctttcctaccaataggatttgctcttgatcatgatgttcagatggtc--tgctttccttacagGAACGTTTAGCCATGGCCCACGGTTCACAATGTGGATTTTGCACCCCTGGTTTTGTGATGTCGATGTATGCATTGCTGAGATCAAGTGAACAGCCTCCTA

upper sequence: GLYMA13G41520.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM5G888877_T01 (Zea mays), 3'ss of exon 2
gtgacatactgtcttcttttatcatgcatatgtactagtattacttgctattgttttgagtatcctttacttgtttggttctcatggtgtaatgtgtttatctccaagccttgggatatgagctttcttcttattttaaatttatatttacccatcaatactttgaatttacccttgtaatctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCACCTA
                                                                              |  | |    |||||     | | | || || ||  | |     ||||| |     |  |  ||  | |||   ||| ||| || ||  |   ||||||         |||||||   | ||   ||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||||||| |  |  | || ||  ||   || || |
----------------------------------------------------------------------------attgtttactaagtaataaagctgttttcatgcattcaggtcgttcctttcctacctgtgcaccttcctcttttatcat-aatgctctgcct---cccttg---------cagGAATGTTTAGCCAAGGCACATGGTTCACAATGTGGATTTTGCACCCCTGGTTTTGTGATGTCTATGTATGCACTGCTGAGATCTAGCAAACAGCCTCCCA

upper sequence: GLYMA13G41520.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G34900.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgacatactgtcttcttttatcatgcatatgtactagtattacttgctattgttttgagtatcctttacttgtttggttctcatggtgtaatgtgtttatctccaagccttgggatatgagctttcttcttattttaaatttatatttacccatcaatac--tttgaatttacccttgtaatctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCACCTA
                                                                                                                      || | ||| | ||| ||  | |||| | ||| | |||   | |  |   ||||  ||||   | |    |||||| ||  ||||     | |||||||| |||||||| ||||||||||| |||||||| ||||| |||||||| || ||  |||||||| |||   ||||| 
---------------------------------------------------------------------------------------------------------------------gtggggttt-tacttcttccagattttttttttctcatttctgcgatcctaattctccct---atttctctcagGAGTCATTGGCATCTTCGCATGGTTCTCAATGTGGGTTTTGTACTCCCGGTTTTGTCATGTCGATGTATGCCTTGTTGAGGTCAAGTAAAAACTCACCTT

upper sequence: GLYMA13G41520.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G34890.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgacatactgtcttcttttatcatgcatatgtactagtattacttgctattgttttgagtatcctttacttgtttggttctcatggtgtaatgtgtttatctccaagccttgggatatgagctttcttcttattttaaatttatatttacccatcaatactttgaatttacccttgtaatctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCACCTA
                                                                                        ||||    ||||  ||     ||  || | |    ||||||||||||||      | |||      ||| |  | |||  ||         ||    |||||| ||  ||||     | |||||||| |||||||| ||||||||||| || ||| | |||||||||||| | || ||  |||||||| |||   ||||| 
----------------------------------------------------------------------------------------gtaaga--tttacttc----tctcaggttcta---tttcttcttatttt--gcggagattcttttgtcactgttatgatcttg--------attctctcagGAGTCTTTGGCATCTTCCCATGGTTCCCAATGTGGGTTTTGTACTCCCGGGTTTATCATGTCCATGTATTCGTTGTTGAGGTCAAGTAAAAACTCACCTT

upper sequence: GLYMA13G41520.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g02030.t01 (Vitis vinifera), 3'ss of exon 3
gtgacatactgtcttcttttatcatgcatatgtactagtattacttgctattgttttgagtatcctttacttgtttggttctcatggtgtaatgtgtttatctccaagccttgggatatgagctttcttcttattttaaatttatatttacccatcaatactttgaatttacccttgtaat-ctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCACCTA
                                                                        || |   |   ||| | | || |   ||    ||  |||     |   |||||||   |  |  |||| || |          |||   | |||| |    ||  ||||  ||| ||||||||  |||| |   ||||||| |||||||| ||||||||||||||||||||  |||||||||||||||| |||||| |||||||||| |||||||| |
-----------------------------------------------------------------------ggtct--ctactatgattttattttcctaaagtcatccctactattgaaagctttc---tggtactaaaattct----------caactgtctgaaat----ctcataatgttctgcagGAATCATTGGCCCTCTCTCATGGGTCACAATGCGGATTTTGTACTCCTGGTTTCATTATGTCCATGTATGCGTTATTAAGGTCAAGTCAGACACCACCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaatttatatttacccatcaatactttgaatttacccttgtaatctcttcagGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCACCTA
                                              tctcttc  CT-rich tract
                      aatactttgaattta  TA-rich tract