1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacaaagtgttcaattggccttgctttatattctcttgttaaaaaattctactttgtgaagttgcttgtaatggcaaaaacataacatttactaaatattttactgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAGCATGCATTGGGGAAACTCTTGAACAGCGTGAAGCTGGTACAACAACGG
species | Glycine max |
transcript | GLYMA13G41120.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|6071447|gb|AW100834.1|AW100834
genomic: AACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|18040397|gb|BM308691.1|BM308691
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|207707167|gb|GD687645.1|GD687645
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: GAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|193513329|gb|FK470093.1|FK470093
genomic: GAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: GCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|207830106|gb|GD801462.1|GD801462
genomic: GCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: AACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|6915528|gb|AW397058.1|AW397058
genomic: AACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|208279834|gb|GE078464.1|GE078464
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: GAATGAATACAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATEST: gi|10843979|gb|BF067325.1|BF067325
genomic: GAATGAAT-CAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTAT
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|207698002|gb|GD681067.1|GD681067
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|193651612|gb|FK598213.1|FK598213
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|192308239|gb|FK002751.1|FK002751
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|193406346|gb|FK372995.1|FK372995
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|15662424|gb|BI699795.1|BI699795
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|192300263|gb|FG987840.1|FG987840
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|193308287|gb|FK277292.1|FK277292
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: GAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|207840806|gb|GD810999.1|GD810999
genomic: GAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|37997347|gb|CF808936.1|CF808936
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|207791068|gb|GD762429.1|GD762429
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|9986087|gb|BE660195.1|BE660195
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|151409950|gb|EV279758.1|EV279758
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|207745235|gb|GD715939.1|GD715939
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAEST: gi|207765423|gb|GD738622.1|GD738622
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
EST: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAG TTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
genomic: TTATTATTGGTCACTCTGAACGGAGGCAGCTTTTGAATGAATCAAATGAGgtacaaagtg ... tgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATA
agttgcttgtaatggcaaaaacataacatttactaaatattttactgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAGCATGCATTGGGGAAACTCTTGAACAGCGTGAAGCTGGTACAACAACGG
tactaaa putative branch site (score: 1)
ttttact putative PPT
aaaaacataacattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaaagtgttcaattggccttgctttatattctcttgttaaaaaattctactttgtgaagttgcttgtaatggcaaaaacataacatttactaaatattttactgtctatcagTTTGTGGGAGATAAAGTTGCCTATGCACTTCAACAAGGTCTGAAAGTTATAGCATGCATTGGGGAAACTCTTGAACAGCGTGAAGCTGGTACAACAACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG