1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cctctacagatcatcagtcagttttgtttgcttgacgtattactttttgtggtatagttttactttacaacatttgatgatcattaattcgttatttcagTATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGCAAATTACGGTGTTGGTGGACTGTGAAGGGTTGTCTCCAGTGAGAATTCC
species | Glycine max |
transcript | GLYMA13G40980.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGCAGTACATTGACATCTGAAGATAGACCTCGATTTGCTCAGGCAGTCA TATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGCEST: gi|13251761|gb|BG362664.1|BG362664
genomic: CTGCAGTACATTGACATCTGAAGATAGACCTCGATTTGCTCAGGCAGTCAgtaagttatt ... gttatttcagTATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGC
EST: CTGCAGTACATTGACATCTGAAGATAGACCTCGATTTGCTCAGGCAGTCA TATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGC
genomic: CTGCAGTACATTGACATCTGAAGATAGACCTCGATTTGCTCAGGCAGTCAgtaagttatt ... gttatttcagTATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGC
tttgtggtatagttttactttacaacatttgatgatcattaattcgttatttcagTATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGCAAATTACGGTGTTGGTGGACTGTGAAGGGTTGTCTCCAGTGAGAATTCC
cattaat putative branch site (score: 3)
ttatttc putative PPT
tatagttttacttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctctacagatcatcagtcagttttgtttgcttgacgtattactttttgtggtatagttttactttacaacatttgatgatcattaattcgttatttcagTATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGCAAATTACGGTGTTGGTGGACTGTGAAGGGTTGTCTCCAGTGAGAATTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
-ctctaca
- - - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgat