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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtagtccactcttatgatttcaaatgttttgctctatttttatggtcttttatcgtgctgcatgtgaattttctcttttaatacttgcaatatttgatctaattgaaccttccaatcaaagactgaacaaactctattcttaatttcagGTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTTGAGTAGTGGTTCTTAAAATTCAGTGAATTTCTGATTGCACTTAATATA

Basic information

species Glycine max
transcript GLYMA13G39270.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208121079|gb|GD917066.1|GD917066
EST:     AAAGAATTGGCAGAAC                         GTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AAAGAATTGGCAGAACgtgggtagtc ... ttaatttcagGTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|151407724|gb|EV277539.1|EV277539
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGAATTGGCAGAACgtgggtagtc ... ttaatttcagGTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|193403245|gb|FK369443.1|FK369443
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGAATTGGCAGAACgtgggtagtc ... ttaatttcagGTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|193514030|gb|FK468736.1|FK468736
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGAATTGGCAGAACgtgggtagtc ... ttaatttcagGTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|213592002|gb|DB975208.1|DB975208
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGAATTGGCAGAACgtgggtagtc ... ttaatttcagGTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|193698066|gb|FK640663.1|FK640663
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGA-TTGGCAGAAC                         GTTCGCTGCCTA
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGAATTGGCAGAACgtgggtagtc ... ttaatttcagGTTCGCTGCCTA
EST: gi|192308674|gb|FG999741.1|FG999741
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTATATTTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGAATTGGCAGAACgtgggtagtc ... ttaatttcagGTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|193629110|gb|FK578058.1|FK578058
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGAATTGGCAGAACgtgggtagtc ... ttaatttcagGTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
EST: gi|213588132|gb|DB979210.1|DB979210
EST:     AACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGAATTGGCAGAAC                         GTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT
genomic: AACTGAGTGTTAACTTCCTTGTCTCTTTGCTGAAAAAGAATTGGCAGAACgtgggtagtc ... ttaatttcagGTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatctaattgaaccttccaatcaaagactgaacaaactctattcttaatttcagGTTCGCTGCCTATATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTTGAGTAGTGGTTCTTAAAATTCAGTGAATTTCTGATTGCACTTAATATA
                                           tcttaat  putative branch site (score: 3)
                                     ctctattctt  CT-rich tract
                                      tctattcttaattt  TA-rich tract