1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttagccttgtcatgaaaaatacatgttcttgtaaccaagtgttgcttcttctttatatacttgtgtttgttacggtgttgattacttgttacactttcagGGTCTGACTGATAAATTCAAGGAGAAGGATACACGGTATACGGGTTCAGCTACACTTTCATACGACGCCTTTATGACTATGGTCCTTCCTTTCCTTGTAT
species | Glycine max |
transcript | GLYMA13G39240.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTCGAGTGTGGGATGATTATTAAG GGTCTGACTGATAAATTCAAGGAGAAGGATACACGGTATACGGGTTCAGCTEST: gi|151394123|gb|EV263994.1|EV263994
genomic: TGTCGAGTGTGGGATGATTATTAAGgtaaaactca ... acactttcagGGTCTGACTGATAAATTCAAGGAGAAGGATACACGGTATACGGGTTCAGCT
EST: TGTCGTGTGTGGGATGATTATTAAG GGTCTGACTGATAAATTCAAGGAGAAGGATACACGGTATACGGGTTCAGCTEST: gi|192310346|gb|FK002226.1|FK002226
genomic: TGTCGAGTGTGGGATGATTATTAAGgtaaaactca ... acactttcagGGTCTGACTGATAAATTCAAGGAGAAGGATACACGGTATACGGGTTCAGCT
EST: TGTCGAGTGTGGGATGATTATTAAG GGTCTGACTGATAAATTCAAGGAGAAGGATACACGGTATACGGGTTCAGCT
genomic: TGTCGAGTGTGGGATGATTATTAAGgtaaaactca ... acactttcagGGTCTGACTGATAAATTCAAGGAGAAGGATACACGGTATACGGGTTCAGCT
ttcttctttatatacttgtgtttgttacggtgttgattacttgttacactttcagGGTCTGACTGATAAATTCAAGGAGAAGGATACACGGTATACGGGTTCAGCTACACTTTCATACGACGCCTTTATGACTATGGTCCTTCCTTTCCTTGTAT
tgttgat putative branch site (score: 4)
cactttc putative PPT
tttatatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagccttgtcatgaaaaatacatgttcttgtaaccaagtgttgcttcttctttatatacttgtgtttgttacggtgttgattacttgttacactttcagGGTCTGACTGATAAATTCAAGGAGAAGGATACACGGTATACGGGTTCAGCTACACTTTCATACGACGCCTTTATGACTATGGTCCTTCCTTTCCTTGTAT
- - - -tgtcatg
- - - - - - - aaaaata
- - - - - - - - - - -catgttc
- - - - - - - - - - - - - - - - - ccaagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgttg