Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacaatattcaggccatttatatgtcatttagtatatctacatcccaactcatcaaacaatctcccctacagGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG

Basic information

species Glycine max
transcript GLYMA13G39210.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14125523|gb|BG789961.1|BG789961
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAGgtatacaata ... tcccctacagGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
EST: gi|15199519|gb|BI423872.1|BI423872
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAGgtatacaata ... tcccctacagGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
EST: gi|15813986|gb|BI786261.1|BI786261
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAGgtatacaata ... tcccctacagGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
EST: gi|209726298|gb|BW659611.1|BW659611
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAGgtatacaata ... tcccctacagGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
EST: gi|7924791|gb|AW830817.1|AW830817
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAN                         GTTACGAGGAANAGTTCTATTTTAATCCAAGTGACACTGGATTTAANG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAGgtatacaata ... tcccctacagGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAA-G
EST: gi|298165233|gb|HO011282.1|HO011282
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAGgtatacaata ... tcccctacagGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
EST: gi|193588755|gb|FK541357.1|FK541357
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATT
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAGgtatacaata ... tcccctacagGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATT
EST: gi|19935096|gb|BQ080126.1|BQ080126
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAGgtatacaata ... tcccctacagGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
EST: gi|209726043|gb|BW672766.1|BW672766
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCTCATATTCCGGATGGACCAGgtatacaata ... tcccctacagGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatgtcatttagtatatctacatcccaactcatcaaacaatctcccctacagGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
                                           tctcccctac  CT-rich tract
         atttagtatatcta  TA-rich tract