1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctttagttgcctgatgttagcatagagatctagatttatttggaacttgtaaaaaaaacatgtatccatatgattcatgtatatttggctatttttcagGATCCTTAATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACAAAGAG
species | Glycine max |
transcript | GLYMA13G39120.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGTTCTATAATGCACGTGAATGTGAAGAGGTTGCCAATCTTTTTAGCAG GATCCTTAATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACEST: gi|213595694|gb|DB962466.1|DB962466
genomic: TGGTTCTATAATGCACGTGAATGTGAAGAGGTTGCCAATCTTTTTAGCAGgtattgcttt ... tatttttcagGATCCTTAATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTAC
EST: TGGTTCTATAATGCACGTGAATGTGAAGAGGTTGCCAATCTTTTTAGCAG GATCCTTAATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACEST: gi|213593287|gb|DB969917.1|DB969917
genomic: TGGTTCTATAATGCACGTGAATGTGAAGAGGTTGCCAATCTTTTTAGCAGgtattgcttt ... tatttttcagGATCCTTAATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTAC
EST: TGGTTCTATAATGCACGTGAATGTGAAGAGGTTGCCAATCTTTTTAGCAG GATCCTTAATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACEST: gi|209709701|gb|BW673969.1|BW673969
genomic: TGGTTCTATAATGCACGTGAATGTGAAGAGGTTGCCAATCTTTTTAGCAGgtattgcttt ... tatttttcagGATCCTTAATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTAC
EST: TGGTTCTATAATGCACGTGAATGTGAAGAGGTTGCCAATCTTTTTAGCAG GATCCTTAATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACEST: gi|151408519|gb|EV278327.1|EV278327
genomic: TGGTTCTATAATGCACGTGAATGTGAAGAGGTTGCCAATCTTTTTAGCAGgtattgcttt ... tatttttcagGATCCTTAATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTAC
EST: TGGTTCTATAATGCACGTGAATGTGAAGAGGTTGCCAATCTTTTTAGCAG GATCCTTAATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACEST: gi|9819945|gb|BE555458.1|BE555458
genomic: TGGTTCTATAATGCACGTGAATGTGAAGAGGTTGCCAATCTTTTTAGCAGgtattgcttt ... tatttttcagGATCCTTAATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTAC
EST: TGGTTCTATAATGCACGTGAATGTGAAGAGGTTGCCAATCTTTTTAGCAG GATCCTTAATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTAC
genomic: TGGTTCTATAATGCACGTGAATGTGAAGAGGTTGCCAATCTTTTTAGCAGgtattgcttt ... tatttttcagGATCCTTAATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTAC
acttgtaaaaaaaacatgtatccatatgattcatgtatatttggctatttttcagGATCCTTAATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACAAAGAG
ctatttttc CT-rich tract
taaaaaaaacatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttagttgcctgatgttagcatagagatctagatttatttggaacttgtaaaaaaaacatgtatccatatgattcatgtatatttggctatttttcagGATCCTTAATGCGTATGCCAAGGTTCCTCCTAAGTCAAAGGTTTCTTCTACAAAGAG
- - - gttgcct
- - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatatg