Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacttctaaaattttatatgtggaggatacagtttctgatgtattttatcttctatgtctttcatttttctaattggagtttgggttcactgaaaaataatactccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCGTTGAGCAGTTGTGGAAGCAATATTTGCGATCGGGAAGATTTTGTTTCGG

Basic information

species Glycine max
transcript GLYMA13G37610.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G37610.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os11g29190.5 (Oryza sativa), 3'ss of exon 2
gtatacttctaaaattttatatgtggaggatacagtttctgatgtattttatcttctatgtctttcatttttctaattggagtttgggttcac-tgaaaaataatactccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCGTTGAGCAGT---------------TGTGGAAGCAATATTTGCGATCGGGAAGATTTTGTTTCGG----------------------------
                                                              |||  ||    | ||   || ||     ||| |     ||   | |   |||||||||||| |||||||| |||||||| || ||| | ||||| |||||||| |||||||  ||               ||   ||||  |      | | || | || | |  ||                               
------------------------------------------------------------ctttttgttcggatgataccaggttattgacacatctgtgatctaattgtgtttcagctatgccatcaagaagaaggatgagatcgagcgtgttgccaagGCCAACCGTTGAGTGGTGATCCCATGTCATTGTGCTAAAGCTCTTGCGCTGTTTGGCAGGACTATACTTTTTGCTAGTAATTTAAGCCTTTTCAGACCTA

upper sequence: GLYMA13G37610.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os11g29190.4 (Oryza sativa), 3'ss of exon 3
gtatacttctaaaattttatatgtggaggatacagtttc-tgatgtattttatcttctatgtctttcatttttctaattggagtttgggttcactgaaaaataatactccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCGTTGAGCAGTTGTGGAAGCAATATTTGCGATCGGGAAGATTTTGTTTCGG
                        | |  | ||| | || || |  || ||   || | |   |   ||  | | |  |     |||      |||  |  ||||  |   |||||||||||| |||||||| |||||||| || ||| | ||||| |||||||| |||||||  ||  |   |      | ||| |  |         ||||| | 
------------------------gtacaacacattgtcatggtacatcttgctttttgt---tcggatgataccaggtta---ttgacacatctgtgatctaat--tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCGTTGAGTGGTGATCCCATGTCATTGTGCTAAAGCTCTTGCGCTGTTTGGC

upper sequence: GLYMA13G37610.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G37270.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatacttctaaaattttatatgtggaggatacagtttctgatgtattttatcttctatgtctttcatttttctaattggagtttgggttcactgaaaaataatactccattt--cagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCGTTGAGCAGTTG---TGGAAGCAATATTTGCG--ATCGGGAAGATTTTGTTTCGG
                      ||  || | ||  | ||| |  || | | |||  |      |||| |||  |  | |    ||  | | |    |  ||  |      | |  ||||||||| |||||||| || ||||| |||||||||||||| ||||||||||||| ||   |     |     | |  |||||   ||    |||| ||| |     
----------------------gta-agaacactctatct-acatagtctgtctcttgatggcttcactttattgttagttagttaagctaataatagcatcttctcttgtcttgcagCTATGCCATCAAGAAGAAAGATGAGATTGAGAGAGTTGCTAAGGCCAATCGTTAAGGGATCTCCCTTTCCTCTAAGTTTGCATTATATCAAAGAGTTTTT-----

upper sequence: GLYMA13G37610.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ16239 (Selaginella moellendorffii), 3'ss of exon 4
gtatacttctaaaattttatatgtggaggatacagtttctgatgtattttatcttctatgtctttcatttttctaattggagtttgggttcactgaaaaataatactc-catttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCGTTGAGCAGTTGTGGAAGCAATATTTGCGATCGGGAAGATTTTGTTTCGG
                                           |||  ||  |  | |    ||   | | ||   |     | |    |  ||      |  |  |    |||||||||||| |||||||||||||| || |||||| | ||||| ||||| |||||||||| |             ||||     |      |  | | ||| | 
-------------------------------------------gtaccttg-cggccagaaattctttctctcgcctcaagctctaaagttccttgtttttgtttttgatgtttcagCTATGCGATCAAGAAAAAGGACGAGATTGAGCGTGTTGCGAAGGCGAATCGTTGAGAAACACATTCTAATGTATTGAGCCTTTTTTGGCATATCTTTTGA

upper sequence: GLYMA13G37610.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ17708 (Selaginella moellendorffii), 3'ss of exon 4
gtatacttctaaaattttatatgtggaggatacagtttctgatgtattttatcttctatgtctttcatttttctaattggagtttgggttcactgaaaaataatactccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCGTTGAGCAGT---TGTGGAAGCAATATTTGCGATCGGGAAGATTTTGTTTCGG
                                           |||  |   |  | |    ||     | ||   |     | |    |  ||      | ||      |||||||||||| ||||||||||||||||| |||||| | ||||| ||||| |||||||||| |     |    | | |||        | || |   | |  ||    
-------------------------------------------gtacctcg-cggccagaaattcttcctctcgcctcaagctctaaagttccttgtttttgatg-----tttcagCTATGCGATCAAGAAAAAGGATGAGATTGAGCGTGTTGCGAAGGCGAATCGTTGAGAAACACATTCTAATGTAATGAACCTTTTTGGCA---TATCATTCGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209700859|gb|BW683089.1|BW683089
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|208157001|gb|GD956387.1|GD956387
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|192311727|gb|FK004890.1|FK004890
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAA
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAA
EST: gi|7286025|gb|AW598512.1|AW598512
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|193538430|gb|FK493760.1|FK493760
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|192318613|gb|FK006201.1|FK006201
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAA
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAA
EST: gi|193376413|gb|FK343114.1|FK343114
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATC
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAA-GAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATC
EST: gi|192302059|gb|FG995207.1|FG995207
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|193445072|gb|FK407948.1|FK407948
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATC
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAA-GAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATC
EST: gi|41145604|gb|CK605815.1|CK605815
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|192318961|gb|FK009041.1|FK009041
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|208134263|gb|GD927926.1|GD927926
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|192318612|gb|FK006200.1|FK006200
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGC-AATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|209705580|gb|BW653058.1|BW653058
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGA
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGA
EST: gi|254317582|gb|GR826566.1|GR826566
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|208045452|gb|GD841190.1|GD841190
EST:     GGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|193546830|gb|FK500501.1|FK500501
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|19345772|gb|BM890652.1|BM890652
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|192316630|gb|FK009343.1|FK009343
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGACGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|151410162|gb|EV279970.1|EV279970
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|5688206|gb|AI941221.1|AI941221
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|58017722|gb|CX704464.1|CX704464
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|58024410|gb|CX711151.1|CX711151
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         TTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|151411621|gb|EV281432.1|EV281432
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|58024285|gb|CX711026.1|CX711026
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|208077933|gb|GD875283.1|GD875283
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|214006789|gb|DB988338.1|DB988338
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|193694404|gb|FK629548.1|FK629548
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|208221889|gb|GE017695.1|GE017695
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|193710083|gb|FK643369.1|FK643369
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|207785559|gb|GD757364.1|GD757364
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|209721227|gb|BW665744.1|BW665744
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|308098925|gb|HO760766.1|HO760766
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|192324881|gb|FK016082.1|FK016082
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|6914646|gb|AW396176.1|AW396176
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|193463311|gb|FK429125.1|FK429125
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|192316235|gb|FK011636.1|FK011636
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|19054172|gb|BM732839.1|BM732839
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|58014348|gb|CX701090.1|CX701090
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|192298022|gb|FG991302.1|FG991302
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCTAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|13478888|gb|BG508231.1|BG508231
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|151395695|gb|EV265572.1|EV265572
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|209700858|gb|BW683088.1|BW683088
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCA
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCA
EST: gi|192311728|gb|FK004891.1|FK004891
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAG-ATGAAATTGAGAGAGTTGCAAAGGCCA-TCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|151402084|gb|EV271897.1|EV271897
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAG-ATGAAATTGAGAGAGTTGCAAAGGCCA-TCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|192299872|gb|FG987830.1|FG987830
EST:     GAATGCTTGGCTGATGGACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|214006218|gb|DB990183.1|DB990183
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|10843344|gb|BF066647.1|BF066647
EST:     GAATGCTTGGCTGATGAACTTATTAATGCAGCACAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCACACGCCAATCG
genomic: GAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCG
EST: gi|193424108|gb|FK391595.1|FK391595
EST:     CTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAG                         CTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCTAATC
genomic: CTTGGCTGATGAACTTATTAATGCAGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCC-AATC
EST: gi|9203746|gb|BE329970.1|BE329970
EST:     AATGCTTGGCTGATGAACTTATTAATGCCAGCGCA-GGGTCATCCCACAG                         CCT-TGCTATCAGGAAGAAGGATGATATTGAGAAAGTT
genomic: AATGCTTGGCTGATGAACTTATTAATGC-AGCAAAAGGGTCATCCAACAGgtatacttct ... tccatttcagC-TATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcatttttctaattggagtttgggttcactgaaaaataatactccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCGTTGAGCAGTTGTGGAAGCAATATTTGCGATCGGGAAGATTTTGTTTCGG
         ttctaat  putative branch site (score: 2)
                                            ctccatttc  putative PPT
                              actgaaaaataata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatacttctaaaattttatatgtggaggatacagtttctgatgtattttatcttctatgtctttcatttttctaattggagtttgggttcactgaaaaataatactccatttcagCTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCAAAGGCCAATCGTTGAGCAGTTGTGGAAGCAATATTTGCGATCGGGAAGATTTTGTTTCGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA