1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgtggcttttattcctatcctggattatgattgttgattagtattgtgtttaatatgggtgattttattttcctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGATAGCACCTTAATCATGCAACTT
species | Glycine max |
transcript | GLYMA13G36690.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|193621952|gb|FK567326.1|FK567326
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|193677069|gb|FK619227.1|FK619227
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|213605462|gb|DB966955.1|DB966955
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCEST: gi|208231058|gb|GE034339.1|GE034339
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGC
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGGAGCTATTTCTGAGCTTGAEST: gi|58017492|gb|CX704234.1|CX704234
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|151411607|gb|EV281418.1|EV281418
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCTTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|193425370|gb|FK387845.1|FK387845
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAEST: gi|151403064|gb|EV272874.1|EV272874
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|209725077|gb|BW659785.1|BW659785
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|254316527|gb|GR828064.1|GR828064
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|209725078|gb|BW659786.1|BW659786
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|298187900|gb|HO031857.1|HO031857
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|17963820|gb|BM270564.1|BM270564
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|6482317|gb|AW201586.1|AW201586
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|213602820|gb|DB978151.1|DB978151
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTTCGAAGCAAGCTTTTGATGAAGCTATTTCCGAGCTTGAEST: gi|193430900|gb|FK393706.1|FK393706
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: CTTTAAATTTCTCTGTTTTCTATTATTGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|209729014|gb|BW651766.1|BW651766
genomic: CTTTAAATTTCTCTGTTTTCTATTA-TGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|209712343|gb|BW671193.1|BW671193
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: AGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|16997097|gb|BM086469.1|BM086469
genomic: AGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|209709689|gb|BW668225.1|BW668225
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTEST: gi|208262337|gb|GE060580.1|GE060580
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCT
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|193694954|gb|FK634340.1|FK634340
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: TTTAAATTTCTCTG-TTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAAGCTTGEST: gi|7146400|gb|AW508322.1|AW508322
genomic: TTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTG-AGCTTG
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|207753749|gb|GD724229.1|GD724229
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|24205692|gb|BU964945.1|BU964945
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|9258319|gb|BE346466.1|BE346466
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: CTGTAAATTTCTTTGGTTTCTATTATGAGATCTTGGACTTCCCTTGAA-G AGCCTGTCATCTTGCGAAGCAGGCTTTTGATGAAGCTATTTCTEST: gi|10848239|gb|BF071695.1|BF071695
genomic: CTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCT-GAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCT
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|58022604|gb|CX709345.1|CX709345
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|193732844|gb|FK668173.1|FK668173
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|193313360|gb|FK282017.1|FK282017
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGEST: gi|151403934|gb|EV273744.1|EV273744
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAG
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|6666341|gb|AW277800.1|AW277800
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATNTCTGAGCTTGAEST: gi|31474413|gb|CD416441.1|CD416441
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|254316526|gb|GR828063.1|GR828063
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|151398789|gb|EV268660.1|EV268660
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGAEST: gi|192304318|gb|FG993574.1|FG993574
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAG AGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: GCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGgtttgtggct ... ctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
tgattgttgattagtattgtgtttaatatgggtgattttattttcctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGATAGCACCTTAATCATGCAACTT
gtttaat putative branch site (score: 4)
ttttattttcctattt putative PPT
attttattttcctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtggcttttattcctatcctggattatgattgttgattagtattgtgtttaatatgggtgattttattttcctatttccagAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGATAGCACCTTAATCATGCAACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG