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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaataaggcatagtatagcaaataaagcttttatttgatatcttataaccaagtaagtctttggtgtctgtgatgcttattgccattatgcttttttcttagcagTTGTTCCCAAGTCTTAACAAGTTGGTCTTCCTCGATGATGACATTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGAAATGAATGGAAAAGTAA

Basic information

species Glycine max
transcript GLYMA13G36280.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G36280.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0014g05130.t01 (Vitis vinifera), 3'ss of exon 4
gtaaaaataaggcatagtatagcaaataaagcttttatttgatatcttataaccaagtaagtctttggtgtctgtgatgcttattgccattatgcttttttcttagcagTTGTTCCCAAGTCTTAACAAGTTGGTCTTCCTCGATGATGACATTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGAAATGAATGGAAAAGTAA
                          |||||   |||||  ||||    | | |   |   | | |  ||  |     | ||    |  |||| ||||  |||  ||||||||| || |||||||||||| | || |||||||| |||||||| ||||| |||||||||||| ||||||||||||||||||| ||| | || ||||| |
-------------------------gtaaaggagttatt-aatataaccttaacctatttctgtataatgcttacttggttttgaacttttattctttcgtct--gcagTTGTTTCCTAGTCTTAACAAGATAGTGTTCCTCGACGATGACATCGTGGTTCAAACTGATCTTACACCTCTGTGGGACATTGACATGGAAGGGAAAGTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13787959|gb|BG650551.1|BG650551
EST:     GTCCCAAGTATAATTCAGTGATGAACCACATCCGGATACATCTCCCAGAG                         TTGTTCCCAAGTCTTAACAAGTTGGTCTTCCTCGATGATGACATTGTGGTA
genomic: GTCCCAAGTATAATTCAGTGATGAACCACATCCGGATACATCTCCCAGAGgtaaaaataa ... ttcttagcagTTGTTCCCAAGTCTTAACAAGTTGGTCTTCCTCGATGATGACATTGTGGTA
EST: gi|151404938|gb|EV274752.1|EV274752
EST:     GTCCCAAGTATAATTCAGTGATGAACCACATCCGGATACATCTCCCAGAG                         TTGTTCCCAAGTCTTAACAAGTTGGTCTTCCTCGATGATGACATTGTGGTA
genomic: GTCCCAAGTATAATTCAGTGATGAACCACATCCGGATACATCTCCCAGAGgtaaaaataa ... ttcttagcagTTGTTCCCAAGTCTTAACAAGTTGGTCTTCCTCGATGATGACATTGTGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtaagtctttggtgtctgtgatgcttattgccattatgcttttttcttagcagTTGTTCCCAAGTCTTAACAAGTTGGTCTTCCTCGATGATGACATTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGAAATGAATGGAAAAGTAA
                                   ttatgcttttttctt  CT-rich tract
                                         ttttttctta  TA-rich tract