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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatcctgtagattacttgtacttgatatttgctgtacccaactttttaattttgattttgtttaatattttcagGAAATTTCTGTTCTGTCCCAATGTCGATGTCCATACATTACTGAATATTATGGTTCCTATCTCAATCAAACTAAACTTTGGATAATAATGGAATACATGG

Basic information

species Glycine max
transcript GLYMA13G34970.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G34970.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 4
-------gtataatcctg-tagattacttgtacttgatatttgctgtacccaactttttaattttgattttgtttaatatttt--cagGAAATTTCTGTTCTGTCCCAATGTCGATGTCCATACATTACTGAATATTATGGTTCCTATCTCAATCAAACTAAACTTTGGATAATAATGGAATACATGG
         | | || || |  |||||  |||  ||| || | |   ||  |   ||    |  | || |   ||  | || |  |||||||| || ||| | || |||||||||| |||||| ||||| || || |||||||| |||||  | ||||| ||||| ||||||||||||||||||||||
gtattttccagagtcttgatcaattaccagtaaatga-atctaccacacaaatgattaggttgcttatctaaattctttttcttccagGAAATCTCAGTTTTATCACAATGTCGATCTCCATATATTACCGAGTACTATGGTTCTTATCTGCACCAAACCAAACTATGGATAATAATGGAATACATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209719593|gb|BW672074.1|BW672074
EST:     AGAGGATGAAATTGACGATATCCAGAAG                         GAAATTTCTGTTCTGTCCCAATGTCGATGTCCATACATTACTGAATATTAT
genomic: AGAGGATGAAATTGACGATATCCAGAAGgtataatcct ... atattttcagGAAATTTCTGTTCTGTCCCAATGTCGATGTCCATACATTACTGAATATTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttgatatttgctgtacccaactttttaattttgattttgtttaatattttcagGAAATTTCTGTTCTGTCCCAATGTCGATGTCCATACATTACTGAATATTATGGTTCCTATCTCAATCAAACTAAACTTTGGATAATAATGGAATACATGG
                                              tattttc  CT-rich tract
                    aactttttaattttga  TA-rich tract