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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctgttatatttttactctcaacttttgcttcagatgtttttttttaaattatatttttgcaaattgcggattccagaaaatttgaagacattgttgtttttgattgatgcaatttgttgctgaccttataactttgtgatgggtagcagCTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC

Basic information

species Glycine max
transcript GLYMA13G33920.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404895|gb|EV274709.1|EV274709
EST:     GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAG                         CTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC
genomic: GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAGgttctgttat ... tgggtagcagCTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC
EST: gi|17519618|gb|BM188660.1|BM188660
EST:     GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAG                         CTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC
genomic: GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAGgttctgttat ... tgggtagcagCTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC
EST: gi|151397360|gb|EV267233.1|EV267233
EST:     GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAG                         CTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC
genomic: GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAGgttctgttat ... tgggtagcagCTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC
EST: gi|10845804|gb|BF068846.1|BF068846
EST:     GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAG                         CTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC
genomic: GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAGgttctgttat ... tgggtagcagCTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC
EST: gi|192294635|gb|FG986484.1|FG986484
EST:     GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAG                         CTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC
genomic: GTTTCTTTCTAGCAAGTTATGAGGACAGTCCAGTTGGTGTCTTTGATGAGgttctgttat ... tgggtagcagCTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttttgattgatgcaatttgttgctgaccttataactttgtgatgggtagcagCTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGC
                               ttataac  putative branch site (score: 2)
                               ttataacttt  TA-rich tract